Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGLLHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGS
DDDYSFCRALKGETVNTTISFSFKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPN

The query sequence (length=140) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2e59:A 144 140 1.0000 0.9722 1.0000 5.88e-104 4g8a:C, 4g8a:D, 3ula:D, 3ula:B, 2z65:C, 2z65:D
2 5ijd:C 137 137 0.6429 0.6569 0.6569 4.50e-68 5ijc:D, 5ijc:C, 5ijd:D, 7mlm:C, 3vq1:C, 3vq1:D, 3vq2:C, 3vq2:D
3 3t6q:C 139 116 0.1714 0.1727 0.2069 3.72e-06 3m7o:A, 3m7o:D, 3t6q:D
4 3b2d:C 139 113 0.1929 0.1942 0.2389 1.01e-04 3b2d:D
5 3rg1:C 138 113 0.1571 0.1594 0.1947 6.99e-04 3rg1:O, 3rg1:D, 3rg1:H, 3rg1:L, 3rg1:P
6 3mu3:A 140 132 0.1786 0.1786 0.1894 0.044 3mu3:B
7 7e4s:A 279 48 0.1071 0.0538 0.3125 0.79 7e4s:B, 7e4s:C, 7e4s:D, 7e4s:E, 7e4s:F, 7ye3:A, 7ye3:B, 7ye3:C, 7ye3:D, 7ye3:E, 7ye3:F, 7yrs:A, 7yrs:B, 7yrs:C, 7yrs:D, 7yrs:E, 7yrs:F
8 7eme:A 413 72 0.1500 0.0508 0.2917 1.0 7eme:B
9 7pkq:j 164 32 0.0857 0.0732 0.3750 2.9
10 4jd1:B 148 33 0.0857 0.0811 0.3636 9.7 5f6q:A, 5f6q:B, 4ir0:A, 4ir0:B, 4jd1:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218