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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QKPGETKEVHPQLTTFRCTKRGGCKPATNFIVLDSLSHPIHRAEGLGPGGCGDWGNPPPKDVCPDVESCAKNCIMEGIPD
YSQYGVTTNGTSLRLQHILPDGRVPSPRVYLLDKTKRRYEMLHLTGFEFTFDVDATKLPCGMNSALYLSEMHPTGAKSKY
NPGGAYYGTGYCDAQCFVTPFINGLGNIEGKGSCCNEMDIWEANSRASHVAPHTCNKKGLYLCEGEECAFEGVCDKNGCG
WNNYRVNVTDYYGRGEEFKVNTLKPFTVVTQFLANRRGKLEKIHRFYVQDGKVIESFYTNKEGVPYTNMIDDEFCEATGS
RKYMELGATQGMGEALTRGMVLAMSIWWDQGGNMEWLDHGEAGPCAKGEGAPSNIVQVEPFPEVTYTNLRWGEIGSTY

The query sequence (length=398) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6yoz:AAA 400 398 1.0000 0.9950 1.0000 0.0 1ojj:A, 1ojj:B, 1ojk:A, 1ojk:B, 6yoz:BBB
2 4ovw:A 400 401 0.5905 0.5875 0.5860 1.26e-179 1ovw:A, 1ovw:B, 1ovw:C, 1ovw:D, 2ovw:A, 2ovw:B, 2ovw:C, 2ovw:D, 4ovw:B
3 1h46:X 431 434 0.4598 0.4246 0.4217 1.51e-99 1z3t:A, 1z3v:A, 1z3w:A
4 2xsp:A 440 439 0.4322 0.3909 0.3918 8.77e-94 2yg1:A, 2yg1:B
5 4v1z:A 440 444 0.4372 0.3955 0.3919 3.75e-88 4v20:A
6 3pfx:A 436 442 0.4246 0.3876 0.3824 1.07e-87 3pfz:A, 3pl3:A
7 5w11:B 440 435 0.4296 0.3886 0.3931 1.08e-85 5w11:A
8 4c4c:A 434 433 0.4095 0.3756 0.3764 1.51e-84 4c4d:A, 1cel:A, 1cel:B, 2cel:A, 2cel:B, 3cel:A, 4cel:A, 4cel:B, 5cel:A, 6cel:A, 7cel:A, 4d5i:A, 4d5j:A, 4d5o:A, 4d5p:A, 4d5q:A, 4d5v:A, 1dy4:A, 1egn:A, 6grn:A, 7nyt:A, 7oc8:A, 1q2b:A, 1q2e:A, 1q2e:B, 6rwf:A, 4uwt:A, 4v0z:A, 2v3i:A, 2v3r:A
9 5o59:A 430 434 0.4070 0.3767 0.3733 3.92e-81 5o59:B
10 4xeb:A 430 435 0.3945 0.3651 0.3609 7.19e-77
11 4zzu:A 438 436 0.3995 0.3630 0.3647 1.51e-76 4zzt:A, 4zzv:A, 4zzw:A
12 2rfy:A 430 442 0.3894 0.3605 0.3507 7.03e-74 2rfy:B, 2rfy:C, 2rfy:D, 2rfz:A, 2rfz:D, 2rfz:B, 2rfz:C, 2rg0:A, 2rg0:B, 2rg0:C, 2rg0:D
13 4hap:A 431 442 0.3995 0.3689 0.3597 9.00e-71 4hap:B, 4haq:A, 4haq:B, 4ipm:A
14 1mnm:C 77 43 0.0352 0.1818 0.3256 0.18 1mnm:D
15 7mqa:SI 803 55 0.0452 0.0224 0.3273 5.0
16 7mq8:SI 844 55 0.0452 0.0213 0.3273 5.0 7mq9:SI
17 7qbk:A 284 82 0.0553 0.0775 0.2683 5.8
18 6c66:A 511 95 0.0578 0.0450 0.2421 6.1 5u07:C, 5u0a:C
19 8dau:G 475 75 0.0503 0.0421 0.2667 9.7 8dar:G, 8das:G, 8dat:G, 8dav:G, 8daw:G, 6jwh:A, 6jwi:A, 6jwi:E, 6jwj:A, 6oa9:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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