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BioLiP
>protein
QKASVSGPNSPSETRRERAFDANTMTSAEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEP

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ffw:A 78 78 1.0000 1.0000 1.0000 7.64e-55
2 2jun:A 101 51 0.6538 0.5050 1.0000 1.44e-33 2dq5:A
3 1szb:A 167 60 0.2179 0.1018 0.2833 0.87 1szb:B
4 8h8e:D 293 20 0.1282 0.0341 0.5000 1.5 8h8e:B, 8h8e:C, 8h8e:E, 8h8e:F
5 2h59:A 246 41 0.1410 0.0447 0.2683 2.2 4buz:A, 4bv2:A, 4bv2:B, 3d4b:A, 3d81:A, 2h2d:A, 2h2f:A, 2h2g:A, 2h2h:A, 2h2i:A, 2h4f:A, 2h4h:A, 2h4j:A, 2h59:B, 3jr3:A, 3pdh:A, 1yc5:A
6 3v0h:B 327 31 0.1667 0.0398 0.4194 3.8 3v0h:A
7 2yur:A 74 33 0.1795 0.1892 0.4242 4.7
8 3ztg:A 92 33 0.1795 0.1522 0.4242 7.3 3ztg:B
9 8btd:LL 168 20 0.1154 0.0536 0.4500 7.5 8br8:LL, 8brm:LL, 8bsi:LL, 8bsj:LL, 8btr:LL, 8fru:J, 7pwg:J, 7pwo:J2
10 8q7i:A 257 53 0.1923 0.0584 0.2830 9.4 7o1f:A, 7o1f:B, 7o1f:D, 7o1f:F, 8p9o:A
11 5usf:A 682 36 0.1410 0.0161 0.3056 9.7 3p0h:A, 3p0i:A, 3p0j:C, 3p0j:D, 5usf:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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