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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QKAINNFLWKKVVPPLVALGIFLVIWQLLCLNPNFKLPGPIETFSETWDPFIINPFFDNGESDKGLGWQILSSLGRVGLG
FSLAAIAGIILGILIGVNPLVYNAVDPIFQVLRTVPPLAWLPISLAAFQQANPSAIFVIFITSIWPILLNTTVGVQQIPQ
DYINVAKVLRLKGVKYFFKIVFPATVPYIFTGLRIGIGLSWLAIVAAEMLVGGVGIGSFIWDAYNTTTETNLSEIILALI
YVGLVGLLLDRLVGFVASKVVAD

The query sequence (length=263) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8wm8:B 265 263 1.0000 0.9925 1.0000 0.0 8wm8:A
2 3na1:A 472 177 0.1445 0.0805 0.2147 0.26 3n9y:A, 3n9y:B, 3n9z:A, 3n9z:B, 3na0:A, 3na0:B, 3na1:B
3 7l6c:B 268 80 0.0760 0.0746 0.2500 3.0 7l6c:A, 7l6c:C, 7l6c:D, 7u0m:A, 7u0m:B
4 6klg:A 547 59 0.0684 0.0329 0.3051 3.9 6kli:A, 6klj:A
5 2qdg:A 366 38 0.0494 0.0355 0.3421 6.2 2qap:A, 2qap:B, 2qap:C, 2qap:D, 2qdg:B, 2qdg:C, 2qdg:D, 2qdh:A, 2qdh:B, 2qdh:C, 2qdh:D
6 1f3t:B 381 75 0.0837 0.0577 0.2933 6.8 1f3t:A, 1f3t:C, 1f3t:D, 1njj:A, 1njj:B, 1njj:C, 1njj:D, 1qu4:A, 1qu4:B, 1qu4:C, 1qu4:D, 1szr:C, 1szr:D, 1szr:A, 1szr:B, 2tod:A, 2tod:B, 2tod:C, 2tod:D
7 2o56:A 392 63 0.0684 0.0459 0.2857 6.9 2o56:B, 2o56:C, 2o56:D, 2o56:E, 2o56:F, 2o56:G, 2o56:H
8 2paa:A 413 115 0.1027 0.0654 0.2348 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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