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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QIQHIAIVGCVHGKYREMYRQLSEYEKSTGKEISFVICTGDMQTLRYEADLVYLKVPPKYKQMGDFHLYYEGKEKAPYLT
LFIGGNHESSNVLLHLYNGGFVCFNMYYLGVCSCININGLRIVGVSGIYKSFDEKKPYTYPPSPNDVVSLFHTRNYVIQM
LSNLSQSSQIDISLSHDWPQGIVMKGNYKQLYRFQPGFKKDGASLGSPINKVILNTLKPKYWISGHMHCEYHAEEGPTHF
IALGKIGYKNAISYLDLPLKQKTDLEYDKDWVCNLIMTWPAFSNKAQFPDLSYSISELLSKRTKELDKKIIELWEKYIGL
KIIYDSDTFDIQFTSRRFYIEKIYNELNIN

The query sequence (length=350) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5k78:B 351 350 0.9971 0.9943 0.9971 0.0 8dzk:A, 8dzk:B, 8dzk:C, 8dzk:D, 8dzk:E, 5k73:A, 5k73:B, 5k73:C, 5k73:D, 5k73:E, 5k77:A, 5k77:B, 5k77:C, 5k77:D, 5k77:E, 5k78:C, 5k78:D, 5k78:A, 5k78:E, 4pef:A, 4pef:B, 4pef:C, 4pef:D, 4pef:E, 4peg:A, 4peg:B, 4peg:C, 4peg:D, 4peg:E, 4peh:A, 4peh:B, 4peh:C, 4peh:D, 4peh:E, 4pei:A, 4pei:B, 4pei:C, 4pei:D, 4pei:E, 5uki:A
2 5tcv:A 299 65 0.0486 0.0569 0.2615 2.5 1wa6:X
3 2ch4:A 320 109 0.0714 0.0781 0.2294 3.8 2ch4:B, 1i58:A, 1i58:B, 1i59:A, 1i59:B, 1i5a:A, 1i5a:B, 1i5b:A, 1i5b:B, 1i5c:A, 1i5c:B, 1i5d:A, 6mi6:A, 6mi6:B, 6mi6:C, 6mi6:D, 8oyq:B, 8oyq:A, 8oyz:B, 8oyz:A, 8oz9:B, 8oz9:A, 8p3n:B, 8p3n:A, 8p3r:A, 8p3r:B, 8p59:A, 8p59:B, 8pf2:B, 8pf2:A
4 8b0i:C 242 28 0.0343 0.0496 0.4286 4.2
5 8b0i:D 282 28 0.0343 0.0426 0.4286 4.8 8b0i:A, 8b0i:B, 8b0j:A, 8b0j:B, 8b0j:D, 8b0j:C
6 7sci:A 487 86 0.0714 0.0513 0.2907 7.7 7yx8:A, 7yx8:B
7 4eqb:A 323 39 0.0400 0.0433 0.3590 8.4 4eqb:B
8 5n7d:A 423 67 0.0457 0.0378 0.2388 9.6 2i04:A, 2i04:B, 5n7d:B, 5n7f:A, 5n7f:B, 5n7g:A, 7p71:A, 7p71:B, 6twq:B, 6twq:A, 6twu:B, 6twu:A, 6twx:B, 6twx:A, 6twy:B, 6twy:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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