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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQELGLVVETEAWHYLSLRISRGEIFLALRDL
SSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ
HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC
LETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPL
SKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG

The query sequence (length=382) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1z6r:A 382 382 1.0000 1.0000 1.0000 0.0 3bp8:A, 3bp8:B, 1z6r:B, 1z6r:C, 1z6r:D
2 1z05:A 396 395 0.4398 0.4242 0.4253 4.99e-116
3 5f7q:E 396 384 0.2147 0.2071 0.2135 5.21e-26 5f7p:E, 5f7p:A, 5f7q:C, 5f7q:J, 5f7q:L, 5f7r:E, 5f7r:A
4 2qm1:B 325 278 0.1885 0.2215 0.2590 9.73e-24 2qm1:A, 2qm1:C, 2qm1:D
5 3vgk:B 312 252 0.1832 0.2244 0.2778 3.73e-20 3vgk:A, 3vgk:C, 3vgk:D, 3vgk:E, 3vgk:F, 3vgk:G, 3vgk:H, 3vgl:A, 3vgm:A
6 2yhw:A 309 223 0.1597 0.1974 0.2735 6.89e-15 2yhy:A, 2yi1:A
7 3vov:B 298 191 0.1361 0.1745 0.2723 2.43e-13 3vov:A, 3vov:C, 3vov:D
8 6jdh:A 293 224 0.1492 0.1945 0.2545 3.43e-13 6jda:A, 6jdh:B, 6jdo:A, 6jdo:B
9 6jdb:A 290 252 0.1702 0.2241 0.2579 1.30e-12
10 3eo3:A 288 194 0.1440 0.1910 0.2835 1.42e-11 3eo3:B, 3eo3:C
11 6jdc:A 269 129 0.1073 0.1524 0.3178 4.12e-11
12 7p7w:BBB 306 270 0.1675 0.2092 0.2370 3.28e-08 7p7i:AAA, 7p7i:BBB, 7p7w:AAA, 7p9l:AAA, 7p9l:BBB, 7p9p:AAA, 7p9p:BBB, 7p9y:AAA, 7p9y:BBB, 7pa1:AAA, 7pa1:BBB
13 1xc3:A 295 159 0.1073 0.1390 0.2579 3.39e-07 3lm9:A, 3ohr:A
14 4db3:A 311 293 0.1728 0.2122 0.2253 3.96e-07
15 2aa4:A 289 109 0.1047 0.1384 0.3670 9.80e-06 2aa4:B
16 2gup:A 289 238 0.1361 0.1799 0.2185 6.52e-04
17 1woq:A 253 112 0.0812 0.1225 0.2768 6.67e-04 1woq:B
18 2ap1:A 305 323 0.1885 0.2361 0.2229 0.26
19 5mrs:A 199 70 0.0550 0.1055 0.3000 2.9 5mrs:B, 5mrs:C, 5mrs:D, 6qoy:A, 6qoy:B, 6qoy:C, 6qoy:D
20 1e20:A 185 68 0.0576 0.1189 0.3235 3.6 1mvl:A, 1mvn:A
21 7nea:A 309 53 0.0471 0.0583 0.3396 4.7 6gkr:A, 6gkr:B, 6gkr:C, 7neb:A, 6q8e:A
22 3rzf:A 541 77 0.0576 0.0407 0.2857 5.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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