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BioLiP
>protein
QIHDITGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGFGHLSPTGT
TEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKF
FTSHNGMQFSTWDNDNDKFEGNCAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWKTRWYSMKKTT
MKIIPFNRL

The query sequence (length=249) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ghg:I 394 249 1.0000 0.6320 1.0000 0.0 3bvh:F, 3bvh:C, 3e1i:C, 3e1i:F, 2ffd:C, 2ffd:F, 1fib:A, 1fic:A, 1fic:B, 1fid:A, 2fib:A, 3fib:A, 1fza:C, 1fza:F, 1fzb:C, 1fzb:F, 1fzc:C, 1fzc:F, 1fze:C, 1fze:F, 1fzf:C, 1fzf:F, 1fzg:C, 1fzg:F, 3ghg:C, 3ghg:F, 3ghg:L, 3h32:C, 3h32:F, 2h43:C, 2h43:F, 2hlo:C, 2hlo:F, 2hod:C, 2hod:F, 2hod:I, 2hod:L, 2hpc:C, 2hpc:F, 2hpc:I, 2hpc:L, 3hus:C, 3hus:F, 1lt9:C, 1lt9:F, 1ltj:C, 1ltj:F, 1n86:C, 1n86:F, 2oyh:C, 2oyh:F, 2oyi:C, 2oyi:F, 2q9i:C, 2q9i:F, 1re3:C, 1re3:F, 1re4:C, 1re4:F, 1rf0:C, 1rf0:F, 1rf1:C, 1rf1:F, 2z4e:C, 2z4e:F
2 1m1j:C 390 249 0.7912 0.5051 0.7912 6.53e-154 1m1j:F
3 1n73:C 322 248 0.6386 0.4938 0.6411 1.93e-118 1lwu:C, 1lwu:F, 1lwu:I, 1lwu:L, 1n73:F
4 7tz2:A 220 237 0.4257 0.4818 0.4473 2.14e-63
5 1m1j:B 402 259 0.4137 0.2562 0.3977 1.63e-61 1m1j:E
6 3ghg:B 401 261 0.4217 0.2618 0.4023 7.30e-61 3bvh:E, 3bvh:B, 3e1i:B, 3e1i:E, 2ffd:E, 2ffd:B, 1fzc:B, 1fzc:E, 1fze:B, 1fze:E, 1fzf:B, 1fzf:E, 1fzg:B, 1fzg:E, 3ghg:E, 3ghg:H, 3ghg:K, 3h32:B, 3h32:E, 2h43:B, 2h43:E, 2hlo:B, 2hlo:E, 2hod:B, 2hod:E, 2hod:H, 2hod:K, 2hpc:B, 2hpc:E, 2hpc:H, 2hpc:K, 3hus:B, 3hus:E, 1lt9:B, 1lt9:E, 1ltj:B, 1ltj:E, 1n86:B, 1n86:E, 2oyh:B, 2oyh:E, 2oyi:B, 2oyi:E, 2q9i:B, 2q9i:E, 1re3:B, 1re3:E, 1re4:B, 1re4:E, 1rf0:B, 1rf0:E, 1rf1:B, 1rf1:E, 2z4e:B, 2z4e:E
7 1fzd:A 197 201 0.3614 0.4569 0.4478 5.32e-55 1fzd:B, 1fzd:C, 1fzd:D, 1fzd:E, 1fzd:F, 1fzd:G, 1fzd:H
8 1lwu:B 315 259 0.3735 0.2952 0.3591 1.65e-54 1lwu:E, 1lwu:H, 1lwu:K, 1n73:B, 1n73:E
9 6y41:F 220 238 0.3815 0.4318 0.3992 3.30e-53 6y41:A, 6y41:B, 6y41:C, 6y41:D, 6y41:E, 6y41:G, 6y41:H, 6y41:I, 6y41:J, 6y41:K, 6y41:L, 6y41:M, 6y41:N, 6y41:O, 6y41:P
10 2jhi:F 217 238 0.3855 0.4424 0.4034 3.25e-49 2d39:A, 2d39:C, 2jhh:C, 2jhh:F, 2jhk:F, 2jhl:F, 2jhm:F, 2wnp:F
11 4m7f:A 220 243 0.3855 0.4364 0.3951 1.82e-48 4m7f:B, 4m7h:A, 4m7h:B, 6zqr:A, 6zqr:B, 6zqx:A, 6zqx:B, 6zqy:A, 6zqy:B, 6zr0:B, 6zr0:A, 6zr3:A, 6zr3:B, 6zr4:A, 6zr4:B
12 7zmk:A 221 240 0.3775 0.4253 0.3917 1.07e-47 8un7:A, 8un7:D, 8un7:B, 8un7:E, 8un7:C, 8un7:F, 8un7:G, 8un7:H, 7zmk:D, 7zmk:I, 7zmk:L, 7zmk:O, 7zmk:R, 7zmk:U, 7zmk:X
13 2j0g:E 218 242 0.3815 0.4358 0.3926 2.30e-45 2j0g:A, 2j0g:B, 2j0g:C, 2j0g:D, 2j0g:F, 2j0h:A, 2j0h:B, 2j0h:C, 2j0h:D, 2j0h:E, 2j0h:F, 2j0y:C, 2j0y:F, 2j0y:B, 2j0y:E, 2j1g:B, 2j1g:C, 2j1g:D, 2j1g:E, 2j1g:F, 2j2p:A, 2j2p:B, 2j2p:C, 2j2p:D, 2j2p:E, 2j2p:F, 2j3f:B, 2j3f:A, 2j3f:C, 2j3f:E, 2j3f:F, 2j3g:A, 2j3g:B, 2j3g:C, 2j3g:D, 2j3g:E, 2j3g:F, 2j3o:A, 2j3o:B, 2j3o:C, 2j3o:D, 2j3o:E, 2j3o:F, 2j3u:A, 2j3u:B, 2j3u:C, 2j3u:D, 2j3u:E, 2j3u:F, 2j61:A, 2j61:B, 4nyt:C, 4nyt:A, 4nyt:B, 4r9j:G, 4r9j:A, 4r9j:B, 4r9t:B, 4r9t:A, 4r9t:C
14 6y43:A 222 240 0.3614 0.4054 0.3750 1.40e-44
15 2j5z:A 214 236 0.3293 0.3832 0.3475 3.72e-42 2j5z:B, 2j5z:C, 2j60:A, 2j60:B, 2j60:C, 2j64:A, 2j64:B, 2j64:C
16 4jyo:X 217 240 0.3695 0.4240 0.3833 5.47e-42 4epu:A, 4epu:B
17 4zfg:A 220 241 0.3373 0.3818 0.3485 1.96e-40 2gy7:A, 1z3s:A, 1z3s:B, 1z3u:A, 1z3u:B, 1z3u:C, 1z3u:D
18 1jc9:A 220 242 0.3494 0.3955 0.3595 3.54e-34
19 8fn9:A 219 244 0.3253 0.3699 0.3320 7.27e-32 8fn9:C, 8fn9:E, 8fn9:G, 8fna:A
20 8fnb:A 219 241 0.3213 0.3653 0.3320 3.95e-29 8fn8:A, 8fnb:B, 5r5t:A, 5r5u:A, 5r5v:A, 5r5w:A, 5r5x:A, 5r5y:A, 5r5z:A, 5r60:A, 5r61:A, 5r62:A, 5r63:A
21 3rva:A 445 73 0.0884 0.0494 0.3014 2.6
22 6t2s:AAA 241 75 0.0924 0.0954 0.3067 4.1 6t2s:BBB, 6t2s:CCC
23 7cya:A 139 41 0.0522 0.0935 0.3171 4.8
24 8tzv:B 348 60 0.0763 0.0546 0.3167 5.9
25 7e1e:A 279 56 0.0562 0.0502 0.2500 6.1 7e1e:B, 7e1e:C
26 8t2j:A 339 56 0.0683 0.0501 0.3036 6.5
27 8uau:A 332 60 0.0763 0.0572 0.3167 6.8
28 3vuv:A 276 136 0.1245 0.1123 0.2279 8.7
29 3a15:B 362 85 0.0763 0.0525 0.2235 9.4 3a15:A, 3a15:C, 3a15:D, 3a16:A, 3a16:B, 3a16:C, 3a16:D, 3a17:A, 3a17:B, 3a17:C, 3a17:D, 3a17:E, 3a17:F, 3a17:G, 3a17:H, 3a18:A, 3a18:B, 3a18:C, 3a18:D
30 8u8z:A 517 61 0.0803 0.0387 0.3279 9.5 8u4x:A, 8u4x:B, 8u62:B, 8u62:A, 8u63:A, 8u63:B, 8u8z:B
31 8u64:A 487 61 0.0803 0.0411 0.3279 9.6 8u64:B, 8u65:B, 8u65:A
32 2m0z:A 97 43 0.0643 0.1649 0.3721 9.9 1d5g:A, 3lny:A, 2m10:A, 1vj6:A, 7xty:A, 7xty:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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