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BioLiP
>protein
QIANVVLADGQAAPADKTFEPQRGQNGVTDPAEWWEKSSPTLNGYRRLTALVRRNAASKSVKVKVAIYDPTLAVTAPSTA
SGIQPSPTVAFTCPVFIEFTLPDACTIQNRKDILAYAKNFLASATATDLVVNTAPQY

The query sequence (length=137) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6yfk:AO 137 137 1.0000 1.0000 1.0000 1.76e-98 6yfk:BG, 6yfk:AU, 6yfk:AC
2 4ang:A 131 143 0.2701 0.2824 0.2587 8.28e-04 4ang:B, 4ang:C
3 8tux:ab 127 106 0.2336 0.2520 0.3019 0.002 2qux:A, 2qux:B, 2qux:E, 2qux:D, 2qux:G, 2qux:H, 2qux:J, 2qux:K, 2qux:M, 2qux:N, 2qux:P, 2qux:Q
4 5kr6:B 460 46 0.1095 0.0326 0.3261 1.1 5kr6:A
5 3h9e:P 337 31 0.1022 0.0415 0.4516 4.0 5c7o:O, 5c7o:P, 3h9e:O, 3pfw:O, 3pfw:P
6 1jdl:A 118 22 0.0876 0.1017 0.5455 4.8
7 6llz:A 436 53 0.1241 0.0390 0.3208 7.6 7cyw:A, 6llw:A, 6llw:B, 6llz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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