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BioLiP
>protein
QIAAHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQGLYYIYAQVTFCSNPFIASLCLKSPGRFERILLR
AANTPCGQQSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGLLKL

The query sequence (length=129) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3lkj:A 133 133 0.9845 0.9549 0.9549 3.25e-89 3lkj:B, 3lkj:C
2 7ta6:E 136 135 0.3178 0.3015 0.3037 1.04e-08 6ooz:C, 6op0:C, 7ta6:B, 7ta6:H, 6x83:D
3 7kp8:A 140 139 0.3023 0.2786 0.2806 8.16e-08 7kp8:B, 7kp8:C
4 7jra:A 153 147 0.3256 0.2745 0.2857 3.66e-07 2az5:A, 2az5:B, 2az5:C, 2az5:D, 7jra:B, 7jra:C, 7kp9:A, 7kp9:B, 7kp9:C, 7kpa:A, 7kpa:B, 7kpa:C, 7kpb:A, 7kpb:B, 7kpb:C, 5mu8:A, 5mu8:B, 5mu8:C, 5mu8:D, 5mu8:F, 5mu8:G, 5mu8:H, 5mu8:I, 5mu8:J, 5mu8:K, 5mu8:L, 5mu8:M, 5mu8:N, 5mu8:O, 5mu8:Q, 5mu8:R, 5mu8:S, 5mu8:U, 5mu8:V, 5mu8:W, 5mu8:X, 5mu8:Y, 5mu8:Z, 5mu8:a, 5mu8:b, 5mu8:c, 5mu8:d, 5mu8:e, 5mu8:f, 5mu8:h, 5mu8:i, 5mu8:j, 5mu8:l, 5mu8:m, 5mu8:n, 5mu8:o, 5mu8:p, 5mu8:q, 5mu8:r, 5mu8:t, 5mu8:u, 5mu8:v, 6ooy:A, 6ooy:B, 6ooy:C, 6ooz:A, 6ooz:B, 6op0:A, 6op0:B, 7ta6:C, 7ta6:D, 7ta6:F, 7ta6:A, 7ta6:G, 4twt:A, 4twt:B, 4twt:D, 5uui:A, 6x81:A, 6x81:C, 6x81:B, 6x81:D, 6x81:E, 6x81:F, 6x82:A, 6x82:B, 6x82:C, 6x82:D, 6x82:E, 6x82:F, 6x83:A, 6x83:B, 6x83:C, 6x83:E, 6x83:F, 6x85:B, 6x85:C, 6x86:A, 6x86:B, 6x86:C, 6x86:D, 6x86:E, 6x86:F
5 2why:A 283 77 0.1705 0.0777 0.2857 0.17 2xuz:A, 2xv1:A
6 4ozt:U 195 46 0.1008 0.0667 0.2826 1.7
7 6s6z:A 1083 53 0.1085 0.0129 0.2642 3.8 6s6z:D, 6s6z:B, 6s6z:H, 6s6z:F, 6s6z:G, 6s6z:E, 6s6z:C, 6sd0:A, 6sd0:B, 6sd0:C, 6sd0:D
8 9b4h:A 1908 52 0.1240 0.0084 0.3077 4.1 9b4h:B, 8wa2:A, 8wa2:D, 8wa2:F, 8wa2:B, 8wa2:C, 8wa2:E
9 6j94:A 457 24 0.0853 0.0241 0.4583 5.8 6j94:B, 6j95:A, 6l8i:A, 6l8j:A
10 5mc1:B 485 69 0.1318 0.0351 0.2464 6.4 6h2p:A, 6h2p:B, 6h2q:A, 6h2q:B, 5m4g:A, 5m4g:B, 5m4j:A, 5m4j:B, 5m4l:A, 5m4l:B, 5m4q:A, 5m4q:B, 5mby:A, 5mby:B, 5mbz:A, 5mbz:B, 5mc0:A, 5mc0:B, 5mc1:A, 5mc2:A, 5mc2:B, 5mc3:A, 5mc3:B, 5mc4:A, 5mc4:B, 5mc5:A, 5mc5:B, 2okn:A, 2okn:B, 6qsb:A, 6qsb:B, 6qsc:A, 6qsc:B, 6sre:A, 6sre:B, 6srf:A, 6srf:B, 6srg:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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