Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QHPDSVIYQTSLMSALLSGVYEGETTIADLLAHGDFGLGTFNELDGEMIAFSSQVYQLRADGSARAAKPEQKTPFAVMTW
FQPQYRKTFDTPVSRQQIHDVIDQQIPSDNLFCALRIDGNFRHAHTRTVPRQTPPYRAMTDVLDDQPVFRFNQREGVLVG
FRTPQHMQGINVAGYHEHFITDDRQGGGHLLDYQLESGVLTFGEIHKLMIDLPADSAFLQANLHPSNLDAAIRSV

The query sequence (length=235) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5yho:A 238 235 1.0000 0.9874 1.0000 4.11e-178 6inb:A, 6inc:A, 6j92:A, 6j92:B, 5yho:B
2 5xne:A 235 219 0.3957 0.3957 0.4247 1.08e-64 6j3d:A, 6j3d:B, 5xne:B
3 4bt2:A 237 221 0.3574 0.3544 0.3801 9.05e-57 4bt3:A, 4bt4:A, 4bt5:A, 4bt6:A, 4bt7:A
4 1xv2:C 233 234 0.3277 0.3305 0.3291 9.01e-40 1xv2:A, 1xv2:B, 1xv2:D
5 5uj5:A 132 55 0.0894 0.1591 0.3818 0.98
6 1qan:A 236 38 0.0511 0.0508 0.3158 1.7 1qao:A, 1qaq:A
7 6gvk:A 201 39 0.0596 0.0697 0.3590 4.8 6gvl:A
8 6k20:A 465 46 0.0638 0.0323 0.3261 5.7 6iii:A, 6iny:A, 6lna:A, 6lna:B
9 7e40:D 345 27 0.0468 0.0319 0.4074 6.0 7e40:B
10 7wfx:A 493 38 0.0553 0.0264 0.3421 8.9 7wfx:B, 7wg1:A, 7wg1:B, 7wg2:A, 7wg4:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218