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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QHILKNPLVAQGIVDKAQIRPSDVVLEVGPGTGNLTVRILEQAKNVVAVEMDPRMAAELTKRVRGTPVEKKLEIMLGDFM
KTELPYFDICISNTPYQISSPLVFKLINQPRPPRVSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNN
FRPPPQVESSVVRLEIKNPRPQVDYNEWDGLLRIVFVRKNRTISAGFKSTTVMDILEKNYKTFLAMNNEMVDDTKGSMHD
VVKEKIDTVLKETDLGDKRAGKCDQNDFLRLLYAFHQVGIHFS

The query sequence (length=283) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aju:JL 283 283 1.0000 1.0000 1.0000 0.0 8cbj:y, 6rbd:y, 7wtl:JL, 7wtm:JL, 6zqd:JL, 6zqe:JL, 6zqf:JL, 6zqg:JL
2 7mqa:NL 278 283 0.5972 0.6079 0.5972 1.63e-126 7wts:3, 1zq9:A, 1zq9:B
3 8x3w:A 270 213 0.2650 0.2778 0.3521 1.40e-35 8x3w:B, 8x41:A, 8x41:B, 8x44:A, 8x44:B, 8x45:A, 8x45:B, 8x46:A, 8x46:B, 8x47:A, 8x4i:A, 8x4l:A, 8x4l:B, 8x4o:A, 8x4o:B, 8x4p:A, 8x4p:B
4 3grr:A 263 225 0.2650 0.2852 0.3333 2.73e-30 3gru:A, 3grv:A, 3gry:A
5 6ift:A 292 215 0.2367 0.2295 0.3116 1.53e-23 7v2l:W, 7v2m:U, 7v2m:W, 7v2n:U, 7v2o:U, 7v2p:U, 7v2q:U, 7v2q:W
6 3fux:C 265 213 0.2509 0.2679 0.3333 7.16e-20 3fuu:A, 3fuw:A, 3fux:A, 3fux:B
7 8eyt:W 254 225 0.2261 0.2520 0.2844 5.84e-18 4adv:V, 7afo:Y, 7o5h:V
8 4gc9:A 318 199 0.2191 0.1950 0.3116 8.89e-12 7pnt:c
9 8csp:5 319 198 0.2191 0.1944 0.3131 5.73e-11 6aax:A, 6aax:C, 6ajk:A, 8csq:5, 8csr:5, 8csu:5
10 3ftf:A 246 210 0.1943 0.2236 0.2619 1.35e-10 3fte:A, 3r9x:B
11 1qan:A 236 171 0.1449 0.1737 0.2398 1.57e-08 1qao:A, 1qaq:A
12 7f8b:A 245 176 0.1625 0.1878 0.2614 1.94e-08 7f8c:A
13 6erp:F 288 239 0.2049 0.2014 0.2427 7.10e-04 6erp:J, 6erq:F, 6erq:J
14 8bic:B 323 83 0.0848 0.0743 0.2892 0.016 8bic:A
15 7wdq:A 336 77 0.0707 0.0595 0.2597 0.025 7wdq:B, 7wdq:C, 7wdw:A, 7wdw:B, 7wdw:C, 7wdw:D
16 2zwv:A 373 80 0.0777 0.0590 0.2750 0.045 3dmf:A, 3dmg:A, 3dmh:A, 2zul:A
17 5eku:B 347 70 0.0813 0.0663 0.3286 0.053 5eku:A, 4m37:A, 4m38:A, 4m38:B
18 7x5b:A 312 29 0.0424 0.0385 0.4138 0.14 6blb:A, 7x7p:M, 7x7p:P, 7x7q:M, 7x7q:P
19 3cjt:A 254 88 0.0707 0.0787 0.2273 0.16 3cjq:A, 3cjq:D, 3cjq:G, 3cjr:A, 3cjt:C, 3cjt:E, 3cjt:G, 3cjt:I, 3cjt:K, 3cjt:M, 3cjt:O, 3egv:A, 2nxe:A, 2nxe:B, 2zbp:A, 2zbq:A, 2zbr:A
20 3gdh:A 211 64 0.0601 0.0806 0.2656 0.17 3egi:A, 3egi:B, 3egi:C, 3egi:D, 3gdh:B, 3gdh:C
21 6c5b:A 332 78 0.0813 0.0693 0.2949 0.19 6c5b:B
22 1jg1:A 215 98 0.1025 0.1349 0.2959 0.24 1jg2:A, 1jg3:A, 1jg3:B, 1jg4:A
23 3e23:A 198 71 0.0707 0.1010 0.2817 0.28
24 5bsz:A 247 47 0.0495 0.0567 0.2979 0.29
25 1i9g:A 264 84 0.0883 0.0947 0.2976 0.44
26 6p3o:A 341 33 0.0424 0.0352 0.3636 0.49 6p3m:A, 6p3n:A
27 2bh2:A 418 63 0.0742 0.0502 0.3333 0.50 2bh2:B, 1uwv:A
28 7v6h:A 267 77 0.0777 0.0824 0.2857 0.54 7v6h:B
29 5ufm:A 225 61 0.0742 0.0933 0.3443 0.65 5ufm:B, 5ufn:A, 5ufn:B
30 8bir:A 321 99 0.0954 0.0841 0.2727 0.71 8big:A, 8big:B, 8big:C, 8big:D, 8big:E, 8big:F, 8big:G, 8big:H, 8bii:A, 8bii:B, 8bii:C, 8bii:D, 8bii:E, 8bii:F, 8bii:G, 8bii:H, 8bir:B
31 5bxy:A 155 77 0.0601 0.1097 0.2208 0.74 5bxy:B
32 6gkv:A 351 33 0.0424 0.0342 0.3636 1.2 6gkv:B, 6gky:A, 6gky:B, 6gkz:A, 6gkz:B, 6gkz:C, 6gkz:D
33 8bif:A 318 69 0.0707 0.0629 0.2899 1.4 8bif:B, 8bif:C, 8bif:D
34 8bgt:A 319 84 0.0707 0.0627 0.2381 1.4 8bgt:B, 8bgx:A, 8bgx:B, 8bgx:C, 8bgx:D, 8bgy:A, 8bgy:B, 8bgy:C, 8bgy:D, 8bgz:A, 8bgz:B, 8bgz:C, 8bgz:D, 8bh0:A, 8bh0:B, 8bh0:C, 8bh0:D, 8bh0:E, 8bh0:F, 8bh0:G, 8bh0:H, 8bib:A, 8bib:B, 8bib:C, 8bib:D, 8bid:A, 8bid:B, 8bid:C, 8bid:D, 8bih:A, 8bih:B, 8bih:C, 8bih:D, 8bih:E, 8bih:F, 8bih:G, 8bih:H, 8bih:I, 8bih:J, 8bih:K, 8bih:L
35 2yqz:A 261 62 0.0565 0.0613 0.2581 1.5 2yqz:B
36 5bp9:A 237 102 0.0989 0.1181 0.2745 1.5
37 7wtt:q 235 77 0.0777 0.0936 0.2857 1.6 6g4w:q, 7wts:q, 7wtu:q, 7wtv:q, 7wtw:q
38 3mb5:A 255 76 0.0777 0.0863 0.2895 1.8 3lga:A, 3lga:B, 3lga:C, 3lga:D, 3lhd:C, 3lhd:A, 3lhd:B, 3lhd:D
39 5xj2:A 454 43 0.0424 0.0264 0.2791 1.9 5xj2:B, 5xj2:C, 5xj2:D, 5zq0:A, 5zq1:A, 5zq8:B, 5zq8:A, 5zth:A
40 8irv:R 279 80 0.0777 0.0789 0.2750 2.4
41 7zkh:A 266 61 0.0707 0.0752 0.3279 2.6 7zkg:A, 7zkg:B
42 1l3i:A 186 72 0.0601 0.0914 0.2361 2.8 1l3i:B, 1l3i:C, 1l3i:D, 1l3i:E, 1l3i:F
43 8bie:A 318 67 0.0636 0.0566 0.2687 3.1 8bie:B, 8bij:A, 8bij:B
44 5e2f:A 237 94 0.0883 0.1055 0.2660 3.1
45 3qta:A 207 52 0.0565 0.0773 0.3077 4.6 3qta:B
46 6uak:A 297 92 0.0954 0.0909 0.2935 5.3
47 4b4x:A 466 91 0.0883 0.0536 0.2747 5.9 4b4x:B, 4b4x:C, 4b4x:D, 4b4z:A, 4b4z:B, 4b4z:C, 4b4z:D, 4ben:A, 4ben:B, 4ben:C, 4ben:D, 2vgj:A, 2vgj:B, 2vgj:C, 2vgj:D, 2vgk:A, 2vgk:B, 2vgk:C, 2vgk:D, 1w79:A, 1w8q:A, 1w8q:B, 1w8q:C, 1w8q:D, 1w8y:A, 1w8y:B, 1w8y:C, 1w8y:D, 2wke:A, 2wke:B, 2wke:C, 2wke:D, 2xdm:A, 2xdm:B, 2xdm:C, 2xdm:D, 2xk1:A, 2xk1:B, 2xk1:C, 2xk1:D, 2xln:A, 2xln:B, 2xln:C, 2xln:D, 2y4a:A, 2y4a:B, 2y4a:C, 2y4a:D, 2y55:A, 2y55:B, 2y55:C, 2y55:D, 2y59:A, 2y59:B, 2y59:C, 2y59:D, 3zcz:A, 3zcz:B, 3zcz:C, 3zcz:D, 3zvt:A, 3zvt:B, 3zvt:C, 3zvt:D, 3zvw:A, 3zvw:B, 3zvw:C, 3zvw:D
48 3g2p:A 251 59 0.0671 0.0757 0.3220 6.3 3g2o:A, 3g2o:B, 3g2p:B, 3g2q:A, 3g2q:B
49 4hh4:C 256 60 0.0636 0.0703 0.3000 7.6 4hh4:A, 4hh4:B, 4hh4:D, 4hh4:E, 4hh4:F
50 5kok:A 348 33 0.0318 0.0259 0.2727 7.7 5koc:A, 5koc:B, 5kok:B, 5kpc:A, 5kpc:B, 5kpg:A, 5kpg:B
51 6nt2:A 330 63 0.0671 0.0576 0.3016 7.9 6nt2:D, 6nt2:B, 6nt2:C, 1or8:A, 1orh:A, 1ori:A, 3q7e:A
52 5wp4:A 485 63 0.0565 0.0330 0.2540 8.0
53 5k2m:G 273 42 0.0495 0.0513 0.3333 8.7 5k2m:I, 5k2m:A, 5k2m:B, 5k2m:C, 5k2m:D, 5k2m:H, 5k2m:J
54 3lbf:A 207 106 0.0742 0.1014 0.1981 8.8 3lbf:B, 3lbf:C, 3lbf:D
55 4y2h:B 352 75 0.0777 0.0625 0.2933 9.2 4c03:A, 4c03:B, 4c04:A, 4c05:A, 4c07:A, 4c08:A, 5e8r:A, 5e8r:B, 5egs:A, 5egs:B, 5egs:C, 5egs:D, 5fqn:A, 5fqo:A, 4hc4:A, 5hzm:A, 5lv4:A, 5lv5:A, 7nr4:A, 7nr4:B, 7nr4:C, 7nr4:D, 7nud:A, 7nud:B, 7nue:A, 7nue:B, 7p2r:A, 7p2r:B, 6p7i:A, 6p7i:B, 6p7i:C, 6p7i:D, 4qpp:B, 4qpp:C, 4qpp:A, 4qqk:A, 6sq3:A, 6sq3:B, 6sq4:A, 6sq4:B, 6sqi:A, 6sqk:B, 6sqk:A, 6w6d:A, 6wad:A, 5wcf:A, 4y2h:A, 4y30:A, 4y30:B
56 6vhy:C 540 59 0.0636 0.0333 0.3051 9.5 6vhv:A, 6vhw:A, 6vhw:B, 6vhx:A, 6vhx:B, 6vhy:D, 6vhy:A, 6vhy:B, 6vhz:A, 6vhz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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