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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QGRYTTDDGYIFNASDIIEDTGDAYIVPHGDHYHYIPKNELSASELAAAEAFLSG

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2cs7:A 55 55 1.0000 1.0000 1.0000 1.27e-35 2cs7:B, 2cs7:C
2 6csl:A 71 43 0.3636 0.2817 0.4651 1.60e-09
3 3zfj:A 119 34 0.2364 0.1092 0.3824 0.12
4 4tqg:A 297 21 0.1818 0.0337 0.4762 0.39
5 8oh5:C 1172 35 0.2000 0.0094 0.3143 1.2 8oh5:F, 8oh5:I, 8oh5:L, 8oh9:C, 8oh9:F, 8oh9:I, 8oh9:L
6 1o4s:B 384 44 0.2727 0.0391 0.3409 2.2 1o4s:A
7 8i0p:A 2149 34 0.2182 0.0056 0.3529 5.6 8q7q:A, 8q7v:A, 8q7w:A
8 7abg:A 2174 34 0.2182 0.0055 0.3529 5.6 7abi:A, 8q91:A, 8rc0:A
9 8y6o:C 2227 34 0.2182 0.0054 0.3529 5.6 8h6e:5B, 8h6j:5B, 8qp9:A, 6qw6:5A, 6qx9:5A, 8qxd:A, 8r08:A
10 5z56:A 2232 34 0.2182 0.0054 0.3529 5.6 7aav:A, 7abf:A, 8ch6:a, 7dvq:A, 8i0s:A, 5z58:A
11 8h6k:5B 2253 34 0.2182 0.0053 0.3529 5.6 8h6l:5B, 8i0u:A, 8i0v:A, 8q7n:A, 8qo9:A, 8qpe:A, 7qtt:a, 8qzs:A
12 8c6j:A 2261 34 0.2182 0.0053 0.3529 5.6 6ah0:A, 6ahd:A, 8bc8:J, 6ff4:A, 6ff7:A, 9fmd:A, 8i0r:A, 8i0t:A, 8i0w:A, 6icz:A, 6id0:A, 6id1:A, 4jk9:A, 4jk9:B, 4jka:A, 4jka:B, 5mqf:A, 5o9z:A, 6qdv:A, 8qoz:A, 8qpa:A, 8qpb:A, 8qpk:A, 8r09:A, 8r0a:A, 8r0b:A, 8rm5:A, 8ro2:A, 7w59:A, 7w5a:A, 7w5b:A, 5xjc:A, 5yzg:A, 6zym:A
13 6tmf:S 111 24 0.1636 0.0811 0.3750 5.8
14 5z57:A 1978 34 0.2182 0.0061 0.3529 6.0
15 8q7x:A 1914 34 0.2182 0.0063 0.3529 6.0
16 8qp8:A 1918 34 0.2182 0.0063 0.3529 6.0
17 8ro0:A 2231 19 0.1636 0.0040 0.4737 7.4 8ro1:A
18 5yrp:A 224 20 0.1455 0.0357 0.4000 8.6 5yrp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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