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BioLiP
>protein
QGQNSVEIEAFGKRYFADLYGGSIGYFLTDDVELALSYGEYHDVVHGNLTSLDAIYHFGTPGVGLRPYVSAGLAHQNITN
INSDSQGRQQMTMANIGAGLKYYFTENFFAKASLDGQYGLEKGEWMAGLGVGFNF

The query sequence (length=135) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4rlc:A 135 135 1.0000 1.0000 1.0000 2.36e-97
2 2va1:B 235 111 0.1926 0.1106 0.2342 0.040 2va1:A, 2va1:C, 2va1:D, 2va1:E, 2va1:F
3 3f3z:A 272 121 0.2148 0.1066 0.2397 0.83
4 8dq2:A 110 33 0.0963 0.1182 0.3939 1.7 8dq2:B, 8dq2:C, 8dq2:D, 8fnr:A, 8fnr:B, 8fnr:C, 8fnr:D
5 4v8p:AG 96 48 0.1333 0.1875 0.3750 2.2 4v8p:DG, 4v8p:FG, 4v8p:HG
6 8i01:A 594 51 0.1185 0.0269 0.3137 2.5 8beo:A, 8beo:B, 8beo:C, 8beo:E, 8beo:D, 8beo:F, 8i01:B, 8i01:C, 8i01:E, 8i01:D, 8i01:F, 8i05:A, 8i05:B, 8i05:C, 8i05:E, 8i05:D, 8i05:F, 8i07:A, 8i07:B, 8i07:C, 8i07:E, 8i07:D, 8i07:F, 8i08:A, 8i08:B, 8i08:C, 8i08:E, 8i08:D, 8i08:F, 2pan:A, 2pan:B, 2pan:C, 2pan:D, 2pan:E, 2pan:F
7 7qfo:A 379 36 0.1037 0.0369 0.3889 2.7 7qfn:A, 7zbg:A
8 7dsx:B 509 41 0.1037 0.0275 0.3415 2.8 7dsv:A, 7dsv:B, 7dsw:B, 7dsw:A, 7dsx:A
9 3jd5:I 311 34 0.0963 0.0418 0.3824 4.0 6neq:I, 6nf8:I
10 7p2e:G 330 34 0.0889 0.0364 0.3529 6.5 7a5f:G6, 7a5g:G6, 7a5i:G6, 7a5k:G6, 8any:AG, 8csp:G, 8csq:G, 8csr:G, 8css:G, 8cst:G, 8csu:G, 3j9m:AG, 8k2a:SI, 7l08:AG, 6nu2:AG, 6nu3:AG, 7og4:AG, 8oir:Ag, 8ois:Ag, 7pnx:G, 7pny:G, 7pnz:G, 7po0:G, 7po1:G, 7po2:G, 7po3:G, 7qi4:AG, 7qi5:AG, 7qi6:AG, 8qrk:G, 8qrl:G, 8qrm:G, 8qrn:G, 6rw4:G, 6rw5:G, 6vlz:AG, 6vmi:AG, 8xt0:SI, 8xt2:SI, 6zm5:AG, 6zm6:AG, 6zs9:AG, 6zsa:AG, 6zsb:AG, 6zsc:AG, 6zsd:AG, 6zse:AG, 6zsg:AG
11 6gaw:AI 328 34 0.0889 0.0366 0.3529 7.2 5aj3:I, 5aj4:AI, 6gaz:AI, 7nqh:AI, 7nql:AI, 7nsi:AI, 7nsj:AI, 8oin:Ag, 8oip:Ag, 6ydp:AI, 6ydw:AI
12 7pnt:G 325 34 0.0889 0.0369 0.3529 7.5 7pnu:G, 7pnv:G, 7pnw:G
13 5a2o:A 470 46 0.1037 0.0298 0.3043 8.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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