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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QGPLSTLIEQISIDTDWVRSFAIYCVSYKGIDFSERPKRLVTLASETYKSGSVYCLVKGANKEACYWVLLPKDSKLDLKD
TSLAIKPSSAAELPTWQLARLLIKAIPKVLSGTMPEIKRFESEGLYYLVKSKKLPKDHSGYELTTVEIDLAPCAALGFKQ
TLSMGTKTFSPLSWFTLENGEVQKKARFATRYQLDDVGKLVSKSIKGDYIKKPLYSNAKNRIQAIDITKESYSGFQLSKV
GILEQFMQDLKQAYGDSVSVKLQRIPGEKHRFVSDTIVKNHYVGLFDALKEHRLVICDLTENQDTDAALTLLHGIEHLDI
NAEIAEVPIRGALNILIVGNKDTYKSDEEDPYQVYRKKYQDTVFQSCYPERLWNRQGQPNRHVVEVLLKELLIKLEVHTR
KHLIEYPSGPERCVYYMPQRPRDEPWPVYASKLVGDEWQYTQATQEELEDIELDLGNDKRHVFHGFERSPVIYWPETGDY
AIFIDTGIQMLPEFEAVAERLRELKEGRSQDVPIALLAQFIEENPESKVINKLRAILSEWDDVAPLPFDEFSTIAYKSSD
EKQFYDWLREQGFFLKTSIRGQSEGFFNASLGFFYNREQGMYFAGGKGSPQSKIETFSHLYLIKHSFDALPEEVENLFDV
YHLRHRLPTVTPYPFKHLREYVEMQRFRS

The query sequence (length=669) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8u3k:E 669 669 1.0000 1.0000 1.0000 0.0 8u0j:A
2 9ezy:B 657 677 0.9701 0.9878 0.9586 0.0
3 8fky:SM 500 46 0.0224 0.0300 0.3261 2.8 8fkp:SM, 8fkq:SM, 8fkr:SM, 8fks:SM, 8fkt:SM, 8fku:SM, 8fkv:SM, 8fkw:SM, 8fkx:SM, 8fkz:SM, 8fl2:SM, 8fl3:SM, 8fl4:SM, 8fl6:SM, 8fl7:SM, 8fla:SM, 8flb:SM, 8fld:SM, 8fle:SM, 8ine:v, 8inf:v, 8ipx:q, 8ipy:q, 8ir3:q
4 3e1z:A 109 54 0.0314 0.1927 0.3889 3.3
5 5wwp:B 591 58 0.0284 0.0321 0.3276 3.7
6 3muo:A 684 82 0.0314 0.0307 0.2561 4.3 3iuq:A, 3iur:A, 3ivm:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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