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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QGLEYQFEVQGQSEYVDTNFTGTAQGTYYFKNVDASKGPLAEAAFLNQASNVSVAYNYIKYESHTYGVKGEAYLPTPYLP
VYASASYNHTIGDRYALEAGAMLLPNFLVAVGYTSVDAVTARTKYVGNIDGTNMAIGFEAFGVFAEDNAYGMKTDLFVTP
KLSVGASFADVSAFNSGYDHVWGGHTQYFITPAVAVGADFVKANADTQTIGLNAKFRF

The query sequence (length=218) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6gie:A 218 218 1.0000 1.0000 1.0000 1.89e-160
2 5k8k:A 237 89 0.1055 0.0970 0.2584 0.31
3 8csp:5 319 56 0.0780 0.0533 0.3036 1.3 6aax:A, 6aax:C, 6ajk:A, 8csq:5, 8csr:5, 8csu:5
4 8h1c:B 983 110 0.1376 0.0305 0.2727 1.5 8h1c:A, 7xjz:A, 7xk0:A, 7xk1:A, 7xk1:C
5 9asp:B 250 89 0.1055 0.0920 0.2584 2.7 9asm:B, 9asn:B, 9asq:B
6 4v58:G 2060 59 0.0917 0.0097 0.3390 2.9 4v58:H, 4v58:I, 4v58:J, 4v58:K, 4v58:L, 4v59:G, 4v59:H, 4v59:I, 4v59:J, 4v59:K, 4v59:L
7 5tx1:N 473 50 0.0780 0.0359 0.3400 7.7 7tau:N

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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