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BioLiP
>protein
QGENISSLLRELYAKPLSERHVESDGLIFDPAQITSRTANGVAVPHGDHYHFIPYSQLSPLEEKLARIIPL

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6csl:A 71 71 1.0000 1.0000 1.0000 6.72e-48
2 2cs7:A 55 35 0.2394 0.3091 0.4857 1.64e-07 2cs7:B, 2cs7:C
3 7zc6:C 435 35 0.1972 0.0322 0.4000 0.92
4 1kfq:A 571 30 0.1831 0.0228 0.4333 1.5 1kfi:A, 1kfi:B, 1kfq:B
5 3zfj:A 119 25 0.1408 0.0840 0.4000 1.8
6 5a22:A 2002 33 0.2113 0.0075 0.4545 2.4
7 6u1x:A 2059 33 0.2113 0.0073 0.4545 2.5
8 9f7k:A 222 30 0.1690 0.0541 0.4000 3.5 9f7k:B
9 8d2k:A 1105 27 0.1549 0.0100 0.4074 5.8 8d2l:A, 8d2n:A, 8d2p:A
10 6wbr:A 942 27 0.1549 0.0117 0.4074 6.3 6wc0:A
11 3eei:A 231 24 0.1408 0.0433 0.4167 6.3 3eei:B
12 2y5s:B 281 12 0.1268 0.0320 0.7500 8.2 2y5s:A
13 7lgb:A 282 25 0.1268 0.0319 0.3600 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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