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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QFQDCMAHITELNFKRNYQNLTEQSSSNNVVAEELDIKESLKLQMEYYFCDTNLTHDSYLRGIISKSPKNCVDIKVFLKF
NKIQQILKSKKDLIHLIRDSLKESKILKVKMDSLKVKRRFPFNLEQALKNSKQRTLYIDFLPPKCSKQTLVSIFGNFRII
NINLPLQKNSQLCQGFAFIEFFSEEEANQALITKNSSIPKELILLTEKKIGQGSIRIITYKKWQEEKQSFKELSKNQNEQ
KNKNMNQSRKASDEFVSIDVEIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDENSNQLNDLLKEGQAMIRFQN
SDEQRLAIQKLLNHNNNKLQIEIRGQICDVISTIPEDEEKNYWNYIKFKKNEFRKFFFMKKQQK

The query sequence (length=384) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8gap:H 384 384 1.0000 1.0000 1.0000 0.0
2 7lma:H 199 120 0.2812 0.5427 0.9000 1.31e-70 6d6v:H, 4erd:A, 4erd:B, 7lmb:H, 7uy5:H, 7uy6:H
3 7lma:H 199 105 0.2500 0.4824 0.9143 2.77e-56 6d6v:H, 4erd:A, 4erd:B, 7lmb:H, 7uy5:H, 7uy6:H
4 7slp:B 321 326 0.1953 0.2336 0.2301 2.88e-21 6d12:A, 6d12:B, 7slq:B, 4wkr:A, 4wkr:B
5 2vod:B 188 109 0.0755 0.1543 0.2661 4.27e-04 2vod:A, 2von:A, 2von:B, 2voo:A, 2voo:B, 2vop:A, 1yty:A, 1yty:B, 1zh5:A, 1zh5:B
6 7dco:4 174 65 0.0521 0.1149 0.3077 6.41e-04 6g90:R, 5gm6:e, 5nrl:R, 7oqb:R, 7oqe:R, 5zwm:4
7 4ed5:B 169 69 0.0599 0.1361 0.3333 0.001 4ed5:A
8 6m75:A 167 57 0.0495 0.1138 0.3333 0.003
9 8i0v:4 161 58 0.0495 0.1180 0.3276 0.004
10 7zew:A 117 115 0.0885 0.2906 0.2957 0.006 7zex:A
11 7sow:A 95 83 0.0677 0.2737 0.3133 0.017 8ey6:A, 8ey7:A, 8ey8:A, 8g90:A, 8g91:A, 7sop:A, 7soq:A, 7sor:A, 7sor:C, 7sos:A, 7sot:A, 7sou:A, 7sov:A
12 4qqb:A 169 70 0.0573 0.1302 0.3143 0.018 1b7f:A, 1b7f:B, 4qqb:B
13 2kg0:A 92 92 0.0703 0.2935 0.2935 0.023
14 4a8x:A 88 62 0.0469 0.2045 0.2903 0.027
15 2leb:A 101 65 0.0417 0.1584 0.2462 0.054 2lec:A
16 5mqf:o 223 64 0.0547 0.0942 0.3281 0.13 6id1:y, 7w59:y, 7w5a:y, 7w5b:y
17 8by6:B 152 78 0.0521 0.1316 0.2564 0.29 7abg:A1, 6d0y:A, 1h2t:Z, 1h2u:X, 1h2u:Y, 1n52:B, 5oo6:B, 5oo6:E, 5oo6:H, 5oo6:K, 5oo6:N, 5oo6:Q, 5oo6:T, 5oo6:W, 5oob:D, 5oob:J, 5oob:B, 5oob:G, 8pmp:B, 8pnt:B, 8srr:B, 8suy:B
18 2mb0:B 95 56 0.0443 0.1789 0.3036 0.30
19 6gd2:A 84 47 0.0391 0.1786 0.3191 1.1 6g2k:A, 6g2k:B, 6gc5:A, 6gc5:B, 6gc5:C, 6gc5:D, 6gd2:B, 6gd3:B, 6gd3:C
20 1wtb:A 79 66 0.0417 0.2025 0.2424 1.2 1x0f:A
21 4dg4:A 224 148 0.0729 0.1250 0.1892 1.4 1h4w:A, 6har:A, 5jbt:A, 3l33:A, 3l33:B, 3l33:C, 3l33:D, 3l3t:A, 3l3t:B, 3l3t:C, 3l3t:D, 3p92:A, 3p95:A, 5tp0:A, 4u30:A, 4u30:B, 4u30:C, 4u30:D, 4u32:A, 7z9f:X, 7z9f:A
22 8x19:I 864 82 0.0625 0.0278 0.2927 2.2 8x1c:I
23 6f4v:A 341 111 0.0755 0.0850 0.2613 3.8
24 2x1f:A 94 63 0.0391 0.1596 0.2381 4.8 2km8:B, 2x1a:A
25 8fkp:SH 150 71 0.0521 0.1333 0.2817 4.9 8fkq:SH, 8fkr:SH, 8fks:SH, 8fkt:SH, 8fku:SH, 8fkv:SH, 8fkw:SH, 8fkx:SH, 8fky:SH, 8fkz:SH, 8fl2:SH, 8fl6:SH, 8fla:SH, 8fld:SH, 8ine:t, 8inf:t, 8ipx:t, 8ipy:t, 8ir3:t
26 7qde:B 169 67 0.0521 0.1183 0.2985 5.4 7qdd:B
27 8xxm:3G 84 44 0.0443 0.2024 0.3864 6.0 5k0y:O, 8pj1:o, 8pj2:o, 8pj3:o, 8pj4:o, 8pj5:o, 8pj6:o
28 3tfi:A 369 73 0.0547 0.0569 0.2877 7.5 3tfi:B, 3tfj:A, 3tfj:B
29 7dvq:Y 140 45 0.0312 0.0857 0.2667 7.7 8i0p:Y, 8i0r:Y
30 5gza:A 290 30 0.0286 0.0379 0.3667 8.3
31 2ekl:A 312 38 0.0312 0.0385 0.3158 8.9
32 5x8p:v 190 64 0.0417 0.0842 0.2500 9.7 5mmj:v, 5mmm:v, 5x8r:v

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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