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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QFPNTPSFTGFNTPSRIEADIADLAHEGTIPQGLNGAFYRVQPDPQFPPRDIAFNGDGMITRFHIHDGQVDFRQRWAKTD
KWKLENAAGKALFGAYRNPLTDDEAVKGEIRSTANTNAFVFGGKLWAMKEDSPALVMDPATMETFGFEKFGGKMTGQTFT
AHPKVDPKTGNMVAIGYAASGLCTDDVTYMEVSPEGELVREVWFKVPYYCMMHDFGITEDYLVLHIVPSIGSWERLEQGK
PHFGFDTTMPVHLGIIPRRDGVRQEDIRWFTRDNCFAFHVLNAWQEGTKIHFVTCEAKNNMFPFFPDVHGAPFNGMEAMS
HPTDWVVDMASNGEDFAGIVKLSDTAAEFPRIDDRFTGQKTRHGWFLEMDMKRPVELLMNCLFHKDFETGREQHWWCGPV
SSLQEPCFVPRAKDAPEGDGWIVQVCNRLEEQRSDLLIFDALDIEKGPVATVNIPIRLRFGLHGNWANADEIGLA

The query sequence (length=475) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5j55:A 480 479 0.9979 0.9875 0.9896 0.0 5j53:A, 5j54:A, 7qr6:A, 7qr6:B, 7qr6:C
2 6xm7:A 488 486 0.8000 0.7787 0.7819 0.0 6xm6:A, 6xm8:A, 6xm9:A, 6xma:A
3 6ojt:B 481 483 0.5516 0.5447 0.5424 0.0 6ojr:A, 6ojt:A, 6ojw:B, 6ojw:A
4 5v2d:A 488 481 0.4126 0.4016 0.4075 4.07e-124 5v2d:B, 5v2d:C, 5v2d:D
5 6n20:D 501 481 0.4021 0.3812 0.3971 1.69e-113 6b86:A, 6b86:B, 6b86:C, 6b86:D, 8fu2:A, 8fu2:B, 8fu2:C, 8fu2:D, 8fu5:A, 8fu5:B, 8fu5:C, 8fu5:D, 6n1y:A, 6n1y:B, 6n1y:C, 6n1y:D, 6n20:A, 6n20:C, 6n20:B, 6n21:A, 6n21:B, 6n21:C, 6n21:D, 8srl:A, 8srl:B, 8srl:C, 8srl:D, 7t8p:A, 7t8p:B, 7t8p:C, 7t8p:D, 7t8q:A, 7t8q:B, 7t8q:C, 7t8q:D, 5u8x:A, 5u8x:B, 5u8x:C, 5u8x:D, 5u8y:A, 5u8y:B, 5u8y:C, 5u8y:D, 5u8z:A, 5u8z:B, 5u8z:C, 5u8z:D, 5u90:A, 5u90:B, 5u90:C, 5u90:D, 5u97:A, 5u97:B, 5u97:C, 5u97:D
6 7vud:A 535 487 0.3116 0.2766 0.3039 3.10e-60
7 5kja:A 482 470 0.2568 0.2531 0.2596 1.08e-36 2biw:A, 2biw:B, 2biw:C, 2biw:D, 2bix:A, 2bix:B, 6big:A, 6big:B, 6big:C, 6big:D, 6c7k:A, 6c7k:B, 6c7k:C, 6c7k:D, 6c7o:A, 6c7o:B, 6c7p:B, 6c7p:A, 5kja:B, 5kja:C, 5kja:D, 5kja:E, 5kjb:A, 5kjb:B, 5kjb:C, 5kjb:D, 5kjb:E, 5kjd:A, 5kjd:B, 5kjd:C, 5kjd:D, 5kjd:E, 5kk0:A, 5kk0:B, 5kk0:C, 5kk0:D, 4ou8:A, 4ou8:B, 4ou8:C, 4ou8:D, 4ou9:A, 4ou9:B, 4ou9:C, 4ou9:D
8 3npe:A 522 486 0.2568 0.2337 0.2510 8.63e-30
9 6vcf:B 455 470 0.2400 0.2505 0.2426 5.44e-22 6vcf:A, 6vcf:C, 6vcf:D, 6vcf:F, 6vcg:A, 6vcg:B, 6vcg:C, 6vcg:D, 6vch:A, 6vch:B, 6vch:C, 6vch:D
10 8fty:A 483 444 0.2084 0.2050 0.2230 2.31e-17 8fty:C
11 8fty:B 506 456 0.2211 0.2075 0.2303 8.17e-16 8fty:D, 8fty:E, 8fty:F, 8fty:G, 8fty:H
12 6vcf:E 432 473 0.2337 0.2569 0.2347 3.10e-15 6vcg:E, 6vcg:F, 6vch:E, 6vch:F
13 4f30:A 521 505 0.2211 0.2015 0.2079 7.21e-08 8doc:A, 4f2z:A, 4f2z:E, 4f3a:A, 4f3d:A, 4f3d:B, 3fsn:A, 3fsn:B, 7k88:B, 7k89:A, 7k89:B, 7k8g:B, 7l0e:A, 7l0e:B, 4rsc:A, 4rsc:B, 4rse:A, 4rse:B, 4ryx:A, 4ryy:A, 4ryy:B, 4ryz:A, 4ryz:B, 5ul5:A, 5ul5:B, 5ulg:A, 5ulg:B, 4zhk:A, 4zhk:B
14 7k88:A 501 493 0.2147 0.2036 0.2069 7.28e-08 7k8g:A, 3kvc:A, 3kvc:B
15 7wh1:A 499 219 0.1074 0.1022 0.2329 1.30e-06
16 7wh1:A 499 88 0.0589 0.0561 0.3182 3.5
17 7wh0:A 529 515 0.2358 0.2117 0.2175 2.91e-04 7wh0:B
18 6k0k:C 397 47 0.0295 0.0353 0.2979 0.46
19 6k0k:A 479 46 0.0295 0.0292 0.3043 0.58
20 4jyo:X 217 75 0.0442 0.0968 0.2800 0.63 4epu:A, 4epu:B
21 6tjv:F 600 68 0.0421 0.0333 0.2941 2.3
22 1vkm:A 292 52 0.0337 0.0548 0.3077 2.4 1vkm:C, 1vkm:B, 1vkm:D, 1vkm:E, 1vkm:F
23 6fpy:A 600 110 0.0632 0.0500 0.2727 3.8 6fpy:B
24 4xyj:A 768 49 0.0316 0.0195 0.3061 4.3 4rh3:A, 4rh3:B, 4rh3:C, 4rh3:D, 4u1r:A, 4u1r:B, 4u1r:C, 4u1r:D, 4wl0:A, 4wl0:B, 4wl0:C, 4wl0:D, 4xyj:B, 4xyj:C, 4xyj:D, 4xyj:E, 4xyj:F, 4xyj:G, 4xyj:H, 4xyk:A, 4xyk:B, 4xyk:C, 4xyk:D, 4xz2:A, 4xz2:B, 4xz2:C, 4xz2:D
25 6qfo:A 1348 62 0.0337 0.0119 0.2581 4.7 8a19:A, 8a1a:A, 6qep:A, 6qev:B, 6qfk:A, 6sh9:B, 2zxq:A
26 6lqc:A 450 77 0.0400 0.0422 0.2468 6.5 6lql:A
27 5k6o:A 795 83 0.0442 0.0264 0.2530 7.6 5k6m:A, 5k6n:A
28 5ywn:A 333 23 0.0211 0.0300 0.4348 8.3 5yw4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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