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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QEQMRLANQLCFSAYNVSRLFAQFYEKKLKQFGITYSQYLVLLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWV
KRERQQSDKRQLIITLTDNGQQQQEAVFEAISSCYDETKYVFEELEQTLKHLIEK

The query sequence (length=135) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5hli:A 146 141 1.0000 0.9247 0.9574 1.69e-95 5hlg:A, 5hlg:B, 5hlg:C, 5hlg:D, 5hlg:E, 5hlg:F, 5hlg:G, 5hlg:H, 5hlh:A, 5hlh:B, 5hlh:C, 5hlh:D, 5hlh:E, 5hlh:F, 5hlh:G, 5hlh:H, 5hli:B
2 1z9c:C 138 125 0.3778 0.3696 0.4080 7.47e-27 1z9c:A, 1z9c:B, 1z9c:D, 1z9c:E, 1z9c:F
3 3hsr:B 133 115 0.2741 0.2782 0.3217 1.08e-14 3hsr:A, 3hsr:C, 3hsr:D
4 5x80:A 137 99 0.1926 0.1898 0.2626 1.62e-06 5hso:A, 5hso:C, 5hso:D, 5hso:B, 5x7z:A, 5x80:B
5 7kfq:A 141 122 0.2296 0.2199 0.2541 1.90e-06 7kfo:A, 7kh3:A, 7kig:A, 7kjq:A, 7kk0:A, 7kkc:A, 7kki:A
6 3zpl:E 160 97 0.2074 0.1750 0.2887 9.28e-06 3zpl:A, 3zpl:B, 3zpl:F
7 5aip:A 141 103 0.2148 0.2057 0.2816 1.33e-05 5aip:B
8 4em0:B 150 102 0.2148 0.1933 0.2843 1.44e-05
9 5h3r:A 141 91 0.2074 0.1986 0.3077 1.86e-05 5h3r:B
10 6c2s:A 142 69 0.1852 0.1761 0.3623 5.18e-04 6c28:A, 6c28:D, 6c28:B, 6c28:C, 6c2s:D, 6c2s:B, 6c2s:C
11 3ech:B 135 76 0.1852 0.1852 0.3289 0.001 3ech:A
12 2fbh:A 137 113 0.2074 0.2044 0.2478 0.003
13 4fx4:B 133 98 0.1926 0.1955 0.2653 0.003 4fx4:A
14 6pcp:A 140 78 0.1111 0.1071 0.1923 0.003 6pcp:D, 6pcp:B, 6pcp:C, 6pcp:E, 6pcp:F
15 2frh:A 127 78 0.1556 0.1654 0.2692 0.009 2frh:B
16 5cyv:B 143 126 0.2074 0.1958 0.2222 0.012 5cyv:A, 3fm5:C
17 6jbx:A 146 50 0.1111 0.1027 0.3000 0.092 6jbx:B
18 6fi9:A 144 97 0.2000 0.1875 0.2784 0.14 6fi9:B, 6fi9:C, 6fi9:D, 6fi9:E, 6fi9:F, 6fi9:G, 6fi9:H
19 7el3:A 138 115 0.1926 0.1884 0.2261 0.18 7el3:B
20 4rgu:B 144 92 0.1185 0.1111 0.1739 0.20 5bmz:A, 5bmz:B, 5bmz:C, 5bmz:D, 4rgs:A, 4rgs:B, 4rgu:A
21 4aij:B 142 100 0.1778 0.1690 0.2400 0.24 4aij:A, 4aik:A
22 5yhx:N 146 59 0.1259 0.1164 0.2881 0.26 5yhx:A, 5yhx:B, 5yhx:G, 5yhx:H, 5yhx:M, 5yhx:S, 5yhx:T, 5yhy:A, 5yhz:A, 5yi0:B, 5yi0:A, 5yi0:C, 5yi0:D, 5yi2:A, 5yi2:B, 5yi2:E, 5yi2:F, 5yi2:I, 5yi2:J, 5yi2:M, 5yi2:N, 5yi3:A, 5yi3:B, 5yi3:E, 5yi3:F, 5yi3:I, 5yi3:J, 5yi3:M, 5yi3:N
23 3q5f:A 141 84 0.1407 0.1348 0.2262 0.45 3q5f:B
24 7dvr:A 147 44 0.0963 0.0884 0.2955 0.83 7dvt:A, 7dvu:A, 7dvv:A, 7dvv:B
25 3gfi:A 143 92 0.1556 0.1469 0.2283 1.00 3gez:A, 3gfj:A, 3gfl:A, 3gfm:A, 2yr2:B
26 2j68:A 680 41 0.0815 0.0162 0.2683 2.9 2w6d:A, 2w6d:B
27 7uci:A 686 41 0.0963 0.0190 0.3171 3.8 7uci:B
28 7ucl:A 616 41 0.0963 0.0211 0.3171 3.8 7ucl:B
29 4jxy:A 311 51 0.1111 0.0482 0.2941 4.8
30 5odc:A 653 49 0.1185 0.0245 0.3265 5.2 5odc:G, 5odh:A, 5odh:G, 5odi:A, 5odi:G, 5odq:A, 5odq:G, 5odr:A, 5odr:G
31 6wkr:C 606 45 0.1111 0.0248 0.3333 6.4 4mi0:A, 4mi5:A, 8t9g:I
32 8tas:E 570 45 0.1111 0.0263 0.3333 6.5 8tb9:E
33 8t9g:C 536 45 0.1111 0.0280 0.3333 6.9 8fyh:A, 8fyh:G
34 2pk0:A 247 43 0.1037 0.0567 0.3256 9.4 2pk0:B, 2pk0:C, 2pk0:D
35 6o5c:A 215 44 0.0593 0.0372 0.1818 9.9 6o5c:B
36 3f8f:A 114 55 0.1111 0.1316 0.2727 10.0 6do0:A, 6do0:B, 3f8c:A, 3f8f:B, 6fuu:A, 7q34:A, 7q34:B, 7q34:C, 7qz6:A, 7qz6:B, 7qz7:A, 7qz7:B, 7qz8:A, 7qz8:B, 6r1l:A, 6vwe:A, 6vwe:B, 7xuq:A, 8zf1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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