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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QENHHVDYVIRFNYGDIDTPEAIKKFEVLLLELSEVGLQTEVRQGDENSLFVFVRAASKKKLKRAVYQSRVRDWLYGVPQ
SEAERLLVIYHLITVPKAEGGAGITPRHGEWKNVDAIFPLHDEETNRQCMREWSKKTFLSTEDLDRIRNTFGEHVGFYFA
FLQSYFRFLMFPAAFGFSCWLLLGSFSIIYTVVNCLWCIVFIEYWKRQEEDLSCRWQTKGVSAVHEKRAEFKPEKEEVRG
VFPATKRMYRQLLQVPFALLAAVALGAIIATCFAIEIFISEVYNGPLKGYLVFIPTILVSALIPTMSAVLLTVATKLNDY
ENYETQDAYKVALTQKIFVVNFITSYLPIILTAFVYVPFASRIVPYLDVFHSINPDRLRKQVIYFTVTAQIVGFALETID
EARFLTRVRNEAELEDYDVTDDLREMCIQFGYLALFSPVWPLVPVSFLINNWVELRSDFFKICVECKRPWPQRADTIGPW
LDSLGFLSWVGSITSSALVYMFSNGTTIRCWALLLTIFFSEHLYLIVRYAVRSALAKLEPPNTRRERIERFMMRKRYLDT
VLSPTERFWMRQRGWKESAEVGLSLITKAKG

The query sequence (length=591) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7rx3:B 591 591 1.0000 1.0000 1.0000 0.0 7rx3:A, 7rxa:A, 7rxa:B
2 7rx2:B 615 617 0.9915 0.9528 0.9498 0.0 6e0h:B, 6e0h:A, 6e1o:B, 6e1o:A, 7rwj:B, 7rwj:A, 7rx2:A
3 7rxg:B 650 650 0.9915 0.9015 0.9015 0.0 7rxg:A, 7rxh:A
4 7rxb:A 548 580 0.9239 0.9964 0.9414 0.0 7rxb:B
5 8tpm:B 615 616 0.5245 0.5041 0.5032 0.0 8tpm:A, 8tpo:B, 8tpo:A, 8tpp:A, 8tpp:B, 8tpr:A, 8tpr:B
6 8tpt:B 571 587 0.5178 0.5359 0.5213 0.0
7 6qm5:A 673 668 0.5245 0.4606 0.4641 0.0 6qm5:B, 6qm9:A, 6qm9:B, 6qma:A, 6qma:B, 6qmb:A, 6qmb:B, 8toi:A, 8toi:B, 8tok:A, 8tok:B, 8tol:A, 8tol:B, 4wis:A, 4wis:B, 4wit:A, 4wit:B
8 6oy3:B 594 616 0.4992 0.4966 0.4789 0.0 6oy3:A, 8tpn:A, 8tpn:B, 8tpq:A, 8tpq:B, 8tps:A, 8tps:B, 8tpt:A
9 6r7x:A 629 457 0.2115 0.1987 0.2735 9.12e-37 5oc9:A, 5oc9:B, 6r65:A, 6r65:B, 6r7x:B, 6r7y:A, 6r7y:B
10 8qzc:A 701 473 0.2149 0.1812 0.2685 2.81e-27 8qzc:B
11 7zk3:A 721 499 0.2234 0.1831 0.2645 5.11e-25 7b5c:A, 7b5c:B, 7b5e:A, 7b5e:B, 5oyb:A, 5oyb:B, 7zk3:B
12 8bc1:A 527 447 0.1658 0.1860 0.2192 4.40e-21 8bc1:B
13 6bgj:A 490 456 0.1929 0.2327 0.2500 3.65e-20 6bgj:B
14 8sun:B 743 496 0.1794 0.1427 0.2137 4.00e-19 8b8k:A, 8b8k:B, 8b8m:A, 6qp6:A, 6qp6:B, 8sur:B, 8tag:B, 8tai:B, 8tal:B
15 6bgi:A 510 472 0.1980 0.2294 0.2479 1.19e-18 6bgi:B
16 8b8j:A 709 481 0.1810 0.1509 0.2225 3.56e-18 8b8j:B, 8b8q:A, 8b8q:B, 8bc0:A, 6p46:A, 6p46:B, 8sun:A, 8sur:A, 8tag:A, 8tai:A, 8tal:A
17 8b8m:B 682 479 0.1743 0.1510 0.2150 7.70e-16
18 8bc0:B 636 464 0.1709 0.1588 0.2177 3.21e-12 6p48:A, 6p48:B, 6p49:A, 6p49:B, 6qpc:A, 6qpc:B
19 2cuz:A 468 79 0.0372 0.0470 0.2785 4.3 2cv0:A, 2cv0:B, 2cv1:A, 2cv1:B, 2cv2:A, 2cv2:B, 2dxi:A, 2dxi:B, 1g59:A, 1g59:C, 1j09:A, 1n75:A, 1n77:A, 1n77:B, 1n78:A, 1n78:B
20 3bcn:A 209 43 0.0203 0.0574 0.2791 5.0 3bcn:B
21 1keu:A 361 75 0.0389 0.0637 0.3067 6.6 1g1a:A, 1g1a:B, 1g1a:C, 1g1a:D, 1keu:B, 1kew:A, 1kew:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218