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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QELRQFIESFIQERLQGKLDKLQPDEDDKRQTLLATHRREAWLADAARRVGQLQLVTHTLKPIHPDARGSNLHSLPQAPG
QPGLAGSHELGDRLVSDVVGNAAALDVFKFLSLQYQGKNLLNWLTEDSAEALQALSDNAEQAREWRQAFIGITTVKGAPA
SHSLAKQLYFPLPGSGYHLLAPLFPTSLVHHVHALLREARFGDAAKAAREARSRQESWPHGFSEYPNLAIQKFGGTKPQN
ISQLNNERRGENWLLPSLPPNWQRQNVNAPMRHSSVFEHDFGRTPEVSRLTRTLQRFLAKTVHNNLAIRQRRAQLVAQIC
DEALQYAARLRELEPGWSATPGCQLHDAEQLWLDPLRAQTDETFLQRRLRGDWPAEVGNRFANWLNRAVSSDSQILGSPE
AAQWSQELSKELTMFKEILEDERD

The query sequence (length=424) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7jzw:A 427 424 0.9976 0.9906 0.9976 0.0 6b44:A, 6b45:A, 6b47:A, 6b48:A, 7ecv:A, 7ecw:A, 7elm:A, 7elm:K, 7eln:A, 7eln:X, 7eqg:B, 7jzx:A, 7jzy:A, 7jzz:A, 6ne0:A, 7t3j:A, 7t3k:A, 7t3k:a, 7t3l:A, 7t3l:a, 7taw:A, 7taw:a, 7tax:A, 5uz9:A, 6vqv:C, 6vqw:B, 6vqx:B, 7we6:A, 7we6:X, 6whi:A, 7yhs:A
2 6w1x:A 314 273 0.6344 0.8567 0.9853 0.0
3 6w1x:A 314 70 0.1250 0.1688 0.7571 1.47e-24
4 7wwv:A 179 94 0.0613 0.1453 0.2766 0.035 8k0k:A, 8k22:B, 8k23:B, 8k23:b, 8k24:b, 8k24:B, 8k27:A, 8k28:A, 8k29:A
5 4yz0:A 198 39 0.0377 0.0808 0.4103 0.74 4ew9:A, 4ew9:B, 3t9g:A, 3t9g:B, 4yz0:B, 4yza:A, 4yza:B, 4yzq:A, 4yzq:B, 4yzx:A, 4yzx:B, 4z03:A, 4z03:B, 4z05:A, 4z05:B, 4z06:A, 4z06:B
6 7dqx:C 160 48 0.0448 0.1187 0.3958 0.75 7dqx:F
7 4z3d:A 276 59 0.0425 0.0652 0.3051 2.7 3bhi:A, 3bhj:A, 3bhm:A, 2pfg:A, 1wma:A, 4z3d:B, 4z3d:C, 4z3d:D
8 5wda:A 130 66 0.0495 0.1615 0.3182 4.6 5wda:B, 5wda:C, 5wda:D, 5wda:E, 5wda:F, 5wda:G, 5wda:H, 5wda:I, 5wda:J, 5wda:K, 5wda:L, 5wda:M, 5wda:N, 5wda:O, 5wda:P, 5wda:Q, 5wda:R, 5wda:S, 5wda:T, 5wda:U, 5wda:V, 5wda:W, 5wda:X, 5wda:Y
9 7kmq:B 754 74 0.0590 0.0332 0.3378 4.9 7kmq:A
10 8ewg:A 1017 118 0.0873 0.0364 0.3136 5.9
11 2ejq:B 115 70 0.0519 0.1913 0.3143 7.7
12 6rgz:D 122 59 0.0377 0.1311 0.2712 8.5 6azr:B, 6azr:D, 3gl9:A, 3gl9:B, 3gl9:C, 3gl9:D, 4ja2:A, 4jas:B, 4jav:C, 4jav:D, 6rfv:C, 6rfv:D, 6rgy:C, 6rgy:D, 6rgz:C, 6rh0:C, 6rh0:D, 5uht:B, 5uht:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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