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BioLiP
>protein
QELAIQFAAQAVDRNEIEQWVREFAYQGFDARRVIELLKQYGGADWEKDAKKMIVLALTRGNKPRRMMMKMSKEGKATVE
ALINKYKLKEGNPSRDELTLSRVAAALAGRTCQALVVLSEWLPVTGTTMDGLSPAYPRHMMHPSFAGMVDPSLPGDYLRA
ILDAHSLYLLQFSRVINPNLRGRTKEEVAATFTQPMNAAVNSNFISHEKRREFLKAFGLVDSNGKPSAAVMAAAQAYKTA
A

The query sequence (length=241) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ov9:A 245 241 0.9876 0.9714 0.9876 3.39e-180 4h5o:A, 4h5o:B, 4h5o:D, 4h5o:F, 4h5o:G, 4h5o:C, 4h5o:E, 4h5o:H, 4h5o:I, 4h5o:J, 4h5p:A, 4h5p:B, 4h5p:C, 4h5p:D, 4h5q:A, 4h5q:B, 4h5q:C, 3ouo:A, 3ouo:B, 3ouo:C, 3ov9:B, 3ov9:C, 4v9e:AA, 4v9e:AB, 4v9e:AC, 4v9e:AD, 4v9e:AE, 4v9e:AF, 4v9e:AG, 4v9e:AH, 4v9e:AI, 4v9e:AJ, 4v9e:AK, 4v9e:AL, 4v9e:AM, 4v9e:AN, 4v9e:AO, 4v9e:AP, 4v9e:AQ, 4v9e:AR, 4v9e:BA, 4v9e:BB, 4v9e:BC, 4v9e:BD, 4v9e:BE, 4v9e:BF, 4v9e:BG, 4v9e:BH, 4v9e:BI, 4v9e:BJ, 4v9e:BK, 4v9e:BL, 4v9e:BM, 4v9e:BN, 4v9e:BO, 4v9e:BP, 4v9e:BQ, 4v9e:BR
2 4csf:K 251 242 0.4979 0.4781 0.4959 4.22e-82 4csf:A, 4csf:B, 4csf:F, 4csf:C, 4csf:D, 4csf:E, 4csf:G, 4csf:H, 4csf:L, 4csf:I, 4csf:J, 4csf:M, 4csf:N, 4csf:R, 4csf:O, 4csf:P, 4csf:Q, 4csf:S, 4csf:T, 4csf:X, 4csf:U, 4csf:V, 4csf:W
3 4j4v:D 246 237 0.3817 0.3740 0.3882 1.65e-46 4j4v:A, 4j4v:B, 4j4v:C, 4j4v:E
4 6vsp:B 252 110 0.1162 0.1111 0.2545 0.20 6vsp:A, 6xew:A, 6xew:B, 6xex:A
5 3m83:A 325 66 0.0954 0.0708 0.3485 0.40 5jib:A, 5jib:B, 5jib:C, 5jib:D, 5jib:E, 5jib:F, 3m81:A, 3m81:C, 3m81:B, 3m81:D, 3m81:E, 3m81:F, 3m82:A, 3m82:C, 3m82:B, 3m82:D, 3m82:E, 3m82:F, 3m83:B, 3m83:C, 3m83:D, 3m83:E, 3m83:F
6 4qkb:A 190 49 0.0705 0.0895 0.3469 0.58 4qkb:B, 4qkb:C, 4qkd:A, 4qkd:B, 4qkd:C, 4qkf:A, 4qkf:B, 4qkf:C
7 8fkp:L9 183 65 0.0954 0.1257 0.3538 2.3 8fkq:L9, 8fkr:L9, 8fks:L9, 8fkt:L9, 8fku:L9, 8fkv:L9, 8fkw:L9, 8fkx:L9, 8fky:L9, 8fkz:L9, 8ir1:U
8 7kb1:A 428 71 0.0788 0.0444 0.2676 2.6 7kb1:B, 7kb1:C, 7kb1:D
9 3pzi:A 357 67 0.0788 0.0532 0.2836 6.6 3pzo:A, 3pzq:A
10 5zzo:F 199 70 0.0747 0.0905 0.2571 9.8 5zzo:A, 5zzo:B, 5zzo:C, 5zzo:D, 5zzo:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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