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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QEIRLGLPSKGRMSSDTLDLLKDCQLSVKQVNPRQYVAQIPQISNLEVWFQRPKDIVRKLLSLDLGIVGLDVLTEFGQGN
EDLIVVHEALEYGDCRLSIAIPFENVNSLEELQWTEDKPLRVATGFTYLGPKFMKDNGIKHVAFSGALEAAPAMGAILDL
VSSGTTLKENIEGGTVLESQAALVASRRSMIGRKGVLETTHEMLERLEAHLRAMGQFTVVANMRGSSAEEVAERVLSQPS
LAGLQGPTVSPVFCKRDGKVSADYYAIVICVPKKALYKSIQQLRAIGGSGVLVSPLTYIFDEETPRWRQLLSKLG

The query sequence (length=315) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6czm:F 315 315 1.0000 1.0000 1.0000 0.0 6czm:B
2 6czm:E 342 335 1.0000 0.9211 0.9403 0.0 6czm:A, 6czm:C, 6czm:D
3 2vd3:A 289 314 0.3206 0.3495 0.3217 2.35e-27 2vd3:B
4 1h3d:A 288 317 0.2508 0.2743 0.2492 8.29e-19 1q1k:A
5 4yb6:A 296 312 0.2730 0.2905 0.2756 8.45e-19 5ub9:A, 5ub9:B, 5ubg:A, 5ubg:B, 5ubh:A, 5ubh:B, 5ubi:A, 5ubi:B, 4yb5:A, 4yb5:E, 4yb5:B, 4yb5:C, 4yb5:F, 4yb5:D, 4yb6:E, 4yb6:B, 4yb6:C, 4yb6:F, 4yb6:D, 4yb7:B, 4yb7:C, 4yb7:D, 4yb7:E, 4yb7:I, 4yb7:K, 4yb7:A, 4yb7:F, 4yb7:G, 4yb7:H, 4yb7:J, 4yb7:L
6 7dah:C 288 318 0.2667 0.2917 0.2642 1.33e-15 7dah:F
7 5lht:A 284 309 0.2508 0.2782 0.2557 6.49e-13 5lhu:A, 1nh8:A, 5u99:A
8 1z7n:F 205 214 0.1810 0.2780 0.2664 2.44e-07 1z7m:G, 1z7m:E, 1z7m:H, 1z7n:E, 1z7n:G, 1z7n:H
9 6fca:A 209 183 0.1524 0.2297 0.2623 1.90e-04 6fct:A, 6fcw:A, 6fcy:A, 6fd9:A, 6ftt:E, 6ftt:H, 6ftt:G, 6ftt:F, 6fu2:C, 6fu2:D, 6fu7:C, 6fu7:D, 6fua:C, 6fua:D, 6r02:E, 6r02:F, 6r02:G, 6r02:H, 7z6r:C, 7z6r:D, 7z8u:A
10 1usy:G 203 175 0.1270 0.1970 0.2286 0.15 1usy:F, 1usy:E, 1usy:H
11 6ntf:A 491 138 0.0889 0.0570 0.2029 0.34 5ajm:A, 4bgx:A, 4bgy:A, 4bh0:A, 4bh0:C, 4bh0:E, 4bh1:A, 4bh1:C, 4bh1:E, 4bh3:A, 4bh4:A, 6cf5:A, 6cf5:C, 6cf5:E, 6cfg:A, 4cqq:A, 4cqr:A, 4cqu:A, 4cqw:A, 4cqw:C, 4cqw:E, 4cqx:A, 4cqx:C, 4cqx:E, 4cqy:A, 4cqy:C, 4cqy:E, 4cqz:A, 5e2z:C, 5e2z:A, 5e2z:E, 5e30:C, 5e30:A, 5e30:E, 6e7h:C, 2fk0:Q, 1jsn:A, 1jso:A, 4k63:A, 4k63:C, 4k63:E, 4k63:G, 4k64:A, 4k64:C, 4k66:A, 4k66:C, 4k67:A, 4k67:C, 4k67:E, 4k67:G, 4kdn:A, 4kdn:C, 4kdo:C, 4kdo:A, 4n5z:A, 6p3s:U, 6p3s:H, 6vmz:A, 6vmz:C, 6vmz:E, 8zdw:H, 8zdw:C, 8zdw:A, 3znk:A, 3znk:C, 3znk:E, 3znl:A, 3znl:C, 3znl:E, 3znm:A, 3znm:C, 3znm:E, 3zp0:E, 3zp1:E, 3zp2:E, 3zp3:E, 3zp6:E, 3zpb:E
12 8put:A 312 107 0.0921 0.0929 0.2710 1.8 8put:B, 8put:C, 8put:D
13 7pub:Fi 469 87 0.0730 0.0490 0.2644 2.9
14 7edd:A 1394 68 0.0540 0.0122 0.2500 2.9 5xyr:A
15 5xxz:B 1310 68 0.0540 0.0130 0.2500 3.0
16 5xya:A 1358 68 0.0540 0.0125 0.2500 3.1 5xxz:A
17 6vjb:A 1346 50 0.0444 0.0104 0.2800 4.3
18 7x11:A 564 114 0.0857 0.0479 0.2368 4.8 7x11:B, 7x11:C, 7x11:D, 7x12:A, 7x12:B, 7x12:C, 7x12:D
19 4zsi:A 166 84 0.0825 0.1566 0.3095 5.6 4zsi:B, 4zsk:A, 4zsk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218