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BioLiP
>protein
QEEVYCFCRNVSYGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKEIANQRSKS

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2jmi:A 60 60 1.0000 1.0000 1.0000 3.79e-41 2jmj:A
2 1x4i:A 70 42 0.5333 0.4571 0.7619 1.33e-20 7zmx:A, 7zmx:B
3 2qic:A 51 47 0.5000 0.5882 0.6383 5.52e-19
4 2mum:A 50 45 0.4833 0.5800 0.6444 3.45e-18
5 1weu:A 91 48 0.4500 0.2967 0.5625 4.87e-18 3c6w:A, 3c6w:C, 2k1j:A, 2m1r:A, 2pnx:A, 2pnx:C, 2vnf:A, 2vnf:C, 1wen:A
6 1wes:A 71 48 0.4833 0.4085 0.6042 6.78e-18 2g6q:A
7 2naa:A 94 33 0.2333 0.1489 0.4242 0.002
8 4gnd:C 107 44 0.3167 0.1776 0.4318 0.003 4gnd:A, 4gne:A, 4gnf:A, 4gng:A, 4gng:D
9 7mju:A 184 40 0.2500 0.0815 0.3750 0.006 5dag:A, 5dah:B, 5dah:A
10 6j2p:A 98 41 0.2667 0.1633 0.3902 0.013 6j2p:B, 6j2p:D, 6j2p:C
11 2k16:A 75 45 0.2500 0.2000 0.3333 0.021 5c13:A, 5c13:C, 5c13:E, 5c13:G, 2k17:A, 5wxg:A, 5wxh:C, 5wxh:A, 5xmy:A, 5xmy:C
12 9c0o:A 63 55 0.3000 0.2857 0.3273 0.044
13 3kv4:A 432 38 0.2667 0.0370 0.4211 0.27 4do0:A, 3k3n:A, 3k3o:A, 2wwu:A
14 7ypn:D 455 36 0.2500 0.0330 0.4167 0.30 7ypm:A, 7ypm:B, 7ypm:D, 7ypm:C, 7ypn:B
15 2ke1:A 66 37 0.2333 0.2121 0.3784 0.36 2kft:A, 1xwh:A
16 1wem:A 76 37 0.2500 0.1974 0.4054 0.39 4l7x:A, 2m3h:A
17 8f8y:B 433 60 0.3500 0.0485 0.3500 0.89 8f8y:A, 8f8z:A, 8f8z:B, 3kqi:A, 7m10:A, 3pu3:A, 3pu3:B, 3pu8:B, 3pu8:A, 3pua:A, 3pus:A, 3pus:B
18 8hxx:N 375 55 0.3167 0.0507 0.3455 1.8 8hxy:N, 8hy0:N, 8i3f:B, 8jho:N, 8tof:G, 8w9c:E, 8w9d:E, 8w9e:E, 8w9f:E
19 5oql:Z 639 55 0.2333 0.0219 0.2545 1.8
20 6rxt:CI 822 55 0.2333 0.0170 0.2545 1.8 6rxu:CI, 6rxv:CI, 6rxx:CI, 6rxy:CI, 6rxz:CI
21 8ihn:M 357 55 0.3167 0.0532 0.3455 2.1 8kd4:E
22 8s91:D 621 21 0.1500 0.0145 0.4286 2.5 7dpd:A, 7dpd:B, 8s91:E, 8s91:F, 8s94:D, 8s94:F, 8s94:E
23 2puy:B 60 37 0.2000 0.2000 0.3243 3.8 2puy:A
24 5b73:A 313 26 0.1500 0.0288 0.3462 4.7 4cos:A, 7cwh:B, 5y1z:C, 5y1z:D
25 6kde:A 336 42 0.2000 0.0357 0.2857 4.8 5gre:A, 5grh:A, 5gri:A, 5grl:A, 8grd:A, 8gru:A, 8gru:C, 6kde:C, 6kdy:A, 6kdy:C, 6kdy:E, 6kdy:G, 6ke3:A, 6ke3:C, 6ke3:E, 6ke3:G, 6l57:A, 6l59:A, 5yvt:A
26 8dmu:A 476 10 0.1167 0.0147 0.7000 5.5 8dmu:B, 8dmu:C, 8dmu:D
27 7yi2:D 321 53 0.3167 0.0592 0.3585 6.1 7yi0:D, 7yi3:D, 7yi4:D, 7yi5:D
28 8ijy:A 501 25 0.1333 0.0160 0.3200 6.4
29 8w9c:F 156 39 0.2167 0.0833 0.3333 7.5 8hxx:P, 8hy0:P, 8jho:P, 8w9d:F, 8w9e:F, 8w9f:F
30 5wlf:A 60 39 0.2333 0.2333 0.3590 7.7 5wle:A
31 3kv6:D 448 38 0.2667 0.0357 0.4211 8.0 3kv5:D, 3kv5:A, 3kv6:A, 3kv9:A, 3kva:A, 3u78:A
32 2l5u:A 61 35 0.2167 0.2131 0.3714 8.0
33 7yi0:F 120 39 0.2167 0.1083 0.3333 8.2
34 1wep:A 79 55 0.3333 0.2532 0.3636 8.3
35 2yql:A 56 50 0.2500 0.2679 0.3000 8.4
36 7xwt:B 277 17 0.1333 0.0289 0.4706 9.7 7xwv:A, 7xwv:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218