Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QECAVCGWALPHNRMQALTSCECTICPDCFRQHFTIALKEKHITDMVCPACGRQLLSYFSTLDIQLRESLEPDAYALFHK
KLTEGVLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRMNDPEYQAQGLAMY
LQENGIDCPKCKFSYALARGGCMHFHCTQCRHQFCSGCYNAFYAKNKCPEPNCRVKKSLHGHHPRDCLFYLRDWTALRLQ
KLLQDNNVMFNTEPPGCRVIEQKEVPLRDEACGKETPAGYAGLCQAHYKEYLVSLINAHSLDPATLYEVEELETATERYL
HVRPQPLAGEDPPAYQARLLQKLTEEVPLGQSIPR

The query sequence (length=355) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6sc6:A 365 364 1.0000 0.9726 0.9753 0.0 5edv:A, 5edv:B, 6gzy:A, 6gzy:B, 6kc5:B, 6kc6:A, 6kc6:C, 6kc6:E, 6kc6:G, 6kc6:I, 6kc6:K, 4ljo:A, 4ljp:A, 4ljq:B, 4ljq:C, 4ljq:A, 4ljq:D, 6sc5:A, 6sc7:A, 6sc8:A, 6sc9:A, 7v8f:B, 7v8g:D, 7v8g:C
2 2ct7:A 86 77 0.2056 0.8488 0.9481 3.29e-49
3 7od1:A 430 206 0.1465 0.1209 0.2524 1.79e-06 7od1:B
4 5tte:B 442 201 0.1211 0.0973 0.2139 1.53e-04 7b5m:H, 2m9y:A, 1wd2:A
5 7b5l:H 423 201 0.1211 0.1017 0.2139 1.71e-04 7b5n:H, 4kc9:A, 5udh:A
6 8eaz:A 254 205 0.1296 0.1811 0.2244 0.013 8bvl:A, 8bvl:B, 8eaz:B, 7yuj:A, 7yuj:B
7 1wim:A 94 54 0.0479 0.1809 0.3148 0.015 6l99:A
8 4kbl:A 395 201 0.1183 0.1063 0.2090 0.021 4kbl:B, 5udh:B
9 5ait:A 129 134 0.0958 0.2636 0.2537 0.066 5aiu:A, 4ap4:A, 3ng2:A, 3ng2:B, 4ppe:A, 4ppe:B, 2xeu:A
10 7y7l:A 45 34 0.0366 0.2889 0.3824 0.43
11 7yui:B 232 146 0.0930 0.1422 0.2260 0.53 3b08:K, 3b08:B, 3b08:E, 3b08:H, 3b0a:B
12 2djb:A 72 32 0.0366 0.1806 0.4062 1.1
13 5c1z:A 384 102 0.0845 0.0781 0.2941 1.2 4bm9:A, 5c1z:B, 5c23:A, 5c23:B, 5c9v:A, 6glc:A, 6hue:A, 6hue:B, 4i1f:A, 4i1h:A, 8ik6:C, 8ikm:A, 8ikt:A, 8ikv:C, 8ikv:A, 8jwv:A, 5n2w:A, 5n38:A, 8wzn:A, 8wzo:A
14 1k12:A 158 31 0.0282 0.0633 0.3226 2.8
15 4zyn:B 385 105 0.0761 0.0701 0.2571 4.1 4k7d:A, 4k7d:B, 4k7d:C, 4k95:A, 4k95:B, 4k95:C, 4k95:D, 4k95:E, 4k95:F, 4k95:G, 4k95:H, 4k95:I, 4k95:J, 4k95:K, 4k95:L, 7us1:A, 8w31:A, 4zyn:A
16 3cxc:Y 73 32 0.0338 0.1644 0.3750 5.5 1jj2:Y, 1k73:1, 1k8a:1, 1k9m:1, 1kc8:1, 1kd1:1, 1kqs:Y, 1m1k:1, 1m90:1, 1n8r:1, 1nji:1, 3ow2:Y, 1q7y:1, 1q81:1, 1q82:1, 1q86:1, 1qvf:Y, 1qvg:Y, 1w2b:Y
17 8eb0:A 255 51 0.0423 0.0588 0.2941 7.1 7m4m:A, 7m4m:B, 7m4n:A, 7m4n:B, 7m4o:A
18 1kc7:A 872 46 0.0507 0.0206 0.3913 8.3
19 6n13:B 322 196 0.1183 0.1304 0.2143 9.7 2jmo:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218