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BioLiP
>protein
QDWPRRVKTNKGREFMFPTDLLHRTPPQVLLDALVNEYESPLSATELSDDWPEMTFEERKNVAFNL

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8p0y:A 66 66 1.0000 1.0000 1.0000 8.30e-45 8p10:L
2 4c4a:A 641 63 0.3333 0.0343 0.3492 0.25 6ogn:A
3 1p4e:B 413 37 0.1970 0.0315 0.3514 0.36 1flo:A, 1flo:D, 1flo:B, 1flo:C, 1m6x:A, 1m6x:C, 1m6x:D, 1m6x:B, 1p4e:A, 1p4e:C, 1p4e:D
4 6zu5:SF0 186 22 0.1667 0.0591 0.5000 1.6
5 8ow7:A 277 28 0.1515 0.0361 0.3571 1.7 8ow7:B, 8ow7:C, 8ow7:D, 8ow7:E, 8ow7:F
6 8dvm:A 612 26 0.1515 0.0163 0.3846 3.0 4a0p:A, 8dvl:A, 8dvn:A
7 4jo0:A 522 50 0.2424 0.0307 0.3200 3.5 5kik:A, 5kil:A
8 1gdt:A 183 41 0.1515 0.0546 0.2439 6.2 1gdt:B, 2gm4:A, 2gm4:B, 1zr2:A, 1zr2:B, 1zr4:A, 1zr4:B, 1zr4:E, 1zr4:D
9 1jft:A 340 26 0.1818 0.0353 0.4615 6.9 1bdh:A, 1bdi:A, 1jfs:A, 1jh9:A, 1pnr:A, 2pua:A, 2pub:A, 2puc:A, 2pud:A, 2pue:A, 2puf:A, 2pug:A, 1qp0:A, 1qp4:A, 1qp7:A, 1qpz:A, 1qqa:A, 1qqb:A, 1vpw:A, 1wet:A, 1zay:A
10 5o2w:A 248 25 0.1970 0.0524 0.5200 8.2 5o2x:A
11 1qwg:A 251 32 0.1818 0.0478 0.3750 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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