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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QDWNGIPVPANPGNGMTWQLQDNVSDSFNYTSSEGNRPTAFTSKWKPSYINGWTGPGSTIFNAPQAWTNGSQLAIQAQPA
GNGKSYNGIITSKNKIQYPVYMEIKAKIMDQVLANAFWTLTDDETQSIDIMEGYGSDRGGTWFAQRMHLSHHTFIRNPFT
DYQPMGDATWYYNGGTPWRSAYHRYGCYWKDPFTLEYYIDGVKVRTVTRAEIDPNNHLGGTGLNQATNIIIDCENQTDWR
PAATQEELADDSKNIFWVDWIRVYKPVA

The query sequence (length=268) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1o4y:A 270 268 0.9963 0.9889 0.9963 0.0 1urx:A
2 4atf:C 297 296 0.4590 0.4141 0.4155 9.05e-74 4atf:A, 4atf:B, 4atf:D
3 6aii:A 330 321 0.4590 0.3727 0.3832 1.45e-57
4 7fgz:A 260 272 0.3470 0.3577 0.3419 3.01e-50
5 4asm:B 357 355 0.4291 0.3221 0.3239 1.61e-45
6 3ilf:A 257 281 0.2687 0.2802 0.2562 1.26e-10 4ate:A
7 6hy3:A 269 280 0.2537 0.2528 0.2429 1.14e-07
8 4awd:A 297 92 0.1157 0.1044 0.3370 2.16e-06 4awd:B
9 3atg:A 242 206 0.2052 0.2273 0.2670 5.49e-05
10 9int:A 282 131 0.1269 0.1206 0.2595 0.009
11 6nig:C 549 111 0.0896 0.0437 0.2162 1.8 6nig:A, 6nig:B, 6nig:D, 2z7x:A
12 3a79:A 550 117 0.1007 0.0491 0.2308 2.0 3a7b:A, 3a7c:A, 2z81:A, 2z82:A
13 3dgt:A 278 90 0.1007 0.0971 0.3000 3.1
14 4g9i:A 766 50 0.0672 0.0235 0.3600 5.1 4g9i:B, 4g9i:C, 4g9i:D, 4g9i:E, 4g9i:F
15 3vmp:A 632 40 0.0560 0.0237 0.3750 5.1 3vmo:A
16 7awt:G 907 49 0.0597 0.0176 0.3265 6.7 7nyr:G, 7nyu:G, 7nyv:G, 7nz1:G, 7p61:G, 7p62:G, 7p63:G, 7p64:G, 7p69:G, 7p7c:G, 7p7e:G, 7p7j:G, 7p7k:G, 7p7l:G, 7p7m:G, 7z7r:G, 7z7s:G, 7z7t:G, 7z7v:G, 7z80:G, 7z83:G, 7z84:G, 7zc5:G, 7zci:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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