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BioLiP
>protein
QDRFLPIANVSRIMKRSLPANAKISKEAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEAYVGPL
KSYLN

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7c9o:B 85 85 1.0000 1.0000 1.0000 1.85e-60
2 6r2v:B 93 85 0.8941 0.8172 0.8941 1.01e-53 7cvo:B, 7cvq:B, 7cvq:G, 7cvq:L, 7cvq:Q
3 7aw7:B 92 85 0.7294 0.6739 0.7294 3.09e-43 7aw9:B, 4g91:B, 4g92:B, 6y35:B, 6y36:B, 6y37:B, 6y39:B, 6y39:E, 6y39:H
4 4awl:B 92 85 0.6824 0.6304 0.6824 1.72e-41 7ah8:A, 7ah8:C, 6qmp:B, 6qmq:B, 6qms:B, 8qu2:B, 8qu3:B, 8qu4:B
5 1jfi:B 135 83 0.3176 0.2000 0.3253 5.33e-15
6 4wzs:B 113 73 0.3176 0.2389 0.3699 7.34e-10
7 6qmq:C 84 66 0.2588 0.2619 0.3333 0.066 7ah8:B, 7ah8:D, 4awl:C, 6qmp:C, 6qms:C, 8qu2:C, 8qu3:C, 8qu4:C
8 7xlq:A 1319 47 0.1412 0.0091 0.2553 0.072 8epl:A, 7yg5:A
9 8epm:A 991 47 0.1412 0.0121 0.2553 0.12
10 7vfs:A 1266 47 0.1412 0.0095 0.2553 0.19 7vfu:A, 7vfv:A, 7vfw:A
11 7mix:A 1326 47 0.1412 0.0090 0.2553 0.20 7miy:A
12 8x90:A 1377 47 0.1412 0.0087 0.2553 0.44 8x91:A, 8x93:A
13 7aw9:C 118 65 0.2235 0.1610 0.2923 0.44 7aw7:C, 4g91:C, 4g92:C, 6y35:C, 6y36:C, 6y37:C, 6y39:C, 6y39:F, 6y39:I
14 2x6b:A 287 63 0.1882 0.0557 0.2540 1.5 7n9k:A, 7n9l:A, 6o9t:A, 6o9u:A, 6o9v:A, 6o9v:B, 2x6a:A, 2x6c:A
15 7f4v:aA 772 27 0.1412 0.0155 0.4444 2.2 7f4v:bA, 7f4v:cA
16 3v17:A 276 46 0.1647 0.0507 0.3043 2.4 3v17:C, 3v17:B, 3v17:D
17 8wch:A 396 47 0.1647 0.0354 0.2979 2.7 8wch:B
18 7r5s:T 112 57 0.1529 0.1161 0.2281 4.4
19 8e59:A 1230 52 0.1882 0.0130 0.3077 4.6 8e5a:A, 8e5b:A, 7uhf:A, 7uhg:A
20 6px9:B 207 53 0.1647 0.0676 0.2642 5.0
21 2jkb:A 661 29 0.1529 0.0197 0.4483 5.4 4fow:A, 4foy:A, 4fp2:A, 4fp3:A, 4fpc:A, 4fpe:A, 4fpf:A, 4fpg:A, 4fph:A, 4fpj:A, 4fpk:A, 4fpl:A, 4fpo:B, 4fpy:A, 4fq4:A, 2vw1:A, 2vw2:A, 4xe9:A, 4xhb:A, 4xhx:A, 4xil:A, 4xj9:A, 4xja:A, 4xju:A, 4xjw:A, 4xma:A, 4xog:A, 4xyx:A
22 1okg:A 362 58 0.1882 0.0442 0.2759 7.1
23 4v8m:Bj 161 19 0.1294 0.0683 0.5789 7.4 8ova:Bj, 8ove:Bj, 5t5h:j
24 2pfr:A 290 27 0.1176 0.0345 0.3704 8.2 2pfr:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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