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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QDLSDRYESLNNLLNRYSTLNTLIKLSADPSAINAVRENLGASAKNLIGDKANSPAYQAVLLAINAAVGFWNVVGYVTQC
GGNANGQKSISSKTIFNNEPGYRSTSITCSLNGHSPGYYGPMSIENFKKLNEAYQILQTALKRGLPALKENNGKVNVTYT
YTCSGDGNNNCSSQVTGVNNQKDGTKTKIQTIDGKSVTTTISSKVVDSRADGNTTGVSYTEITNKLEGVPDSAQALLAQA
STLINTINNACPYFHAFSTTTGKICGAFSEEISAIQKMITDAQELVNQTSVINEHEQTTPVGNNNGKPFNPFTDASFAQG
MLANASAQAKMLNLAEQVGQAINPERLSGTFQNFVKGFLATCNNPSQGSAPGTVTTQTFASGCAYVGQTITNLKNSIAHF
GTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSNIPNAQSLQNAVSKKNNPYSPQGIDTNYYLNQNSYNQIQTI
NQELK

The query sequence (length=485) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4zh7:A 485 485 1.0000 1.0000 1.0000 0.0
2 5f93:B 426 428 0.7010 0.7981 0.7944 0.0 5f7m:A, 5f7m:B, 5f7n:A, 5f7n:B, 5f7w:A, 5f7w:B, 5f7y:A, 5f7y:B, 5f8r:A, 5f8r:B, 5f93:A, 5f93:E, 5f93:G, 5f97:A, 5f97:B, 5f97:C, 5f97:D, 5f9a:A, 5f9d:A
3 6avz:B 347 417 0.2680 0.3746 0.3118 2.98e-36
4 2h7f:X 314 123 0.0598 0.0924 0.2358 0.24 2h7g:X, 3igc:A
5 8k22:A 929 128 0.0742 0.0388 0.2812 0.76 8k21:a, 8k22:a, 8k23:A, 8k23:a, 8k24:a, 8k24:A, 8k25:A, 8k25:a
6 3plx:B 101 51 0.0330 0.1584 0.3137 2.1
7 7vl3:A 707 75 0.0515 0.0354 0.3333 3.3 7vkx:A, 7vkx:B, 7vky:A, 7vky:B, 7vkz:A, 7vkz:B, 7vl0:A, 7vl0:B, 7vl1:A, 7vl1:B, 7vl2:A, 7vl2:B, 7vl3:B, 7vl4:A, 7vl4:B, 7vl5:B, 7vl6:A, 7vl6:B, 7vl7:A, 7vl7:B, 7x87:A, 7x87:B
8 6tvo:A 1011 176 0.0866 0.0415 0.2386 4.7 2l1l:B
9 7r04:A 2326 65 0.0371 0.0077 0.2769 6.0
10 7pgr:N 2423 65 0.0371 0.0074 0.2769 6.7 2d4q:A, 2d4q:B, 2e2x:B, 3p7z:B, 3pg7:B, 7pgq:F, 7pgr:F, 7pgs:F, 7pgt:F, 7pgu:F, 7pgu:N
11 3dxp:A 329 58 0.0309 0.0456 0.2586 8.9
12 7mlc:A 156 91 0.0598 0.1859 0.3187 9.2 7mld:A, 6nwb:A, 6nwc:A, 3r6p:A
13 7ohu:P 108 56 0.0351 0.1574 0.3036 9.9 7ohp:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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