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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QDLRAFVHDSPEETETTQRLTKLLTNSPIPTEELVNNLPLFLRRHQMTDLLSMDALYRQVLDVPGVIMEFGVRFGRHLGT
FAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECSDFFGHVTQRSVLVEGD
VRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPKWPGENIAMRKVLGLDHAPLRLLPG
RPAPAYLRWGD

The query sequence (length=251) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3tos:B 257 251 1.0000 0.9767 1.0000 0.0 4gf5:A, 4gf5:C, 4gf5:E, 4gf5:F, 4gf5:H, 4gf5:B, 4gf5:D, 4gf5:G, 4gf5:I, 4gf5:J, 4gf5:K, 4gf5:L, 4gf5:M, 4gf5:N, 4gf5:O, 4gf5:P, 4gf5:Q, 4gf5:R, 4gf5:S, 4gf5:T, 3tos:A, 3tos:C, 3tos:D, 3tos:E, 3tos:F, 3tos:G, 3tos:H, 3tos:I, 3tos:J
2 4x7u:A 252 157 0.1713 0.1706 0.2739 0.23 4x7u:B, 4x7v:A, 4x7v:B, 4x7w:A, 4x7w:B, 4x7x:A, 4x7x:B, 4x7y:B, 4x7y:A, 4x7z:A, 4x7z:B, 4x81:A, 4x81:B, 4xvy:A, 4xvy:B
3 7pkt:q 161 86 0.0956 0.1491 0.2791 0.23
4 6v4x:D 106 99 0.1076 0.2547 0.2727 0.68
5 7k5j:I 979 58 0.0598 0.0153 0.2586 3.4 7k5j:D, 7k5j:A, 7k5j:C, 7k5j:G, 7k5j:K, 7k5j:S, 5tr4:A, 5tr4:C
6 6pev:A 478 129 0.1155 0.0607 0.2248 3.4 4eme:A, 4eme:B, 4eme:C, 4eme:D, 6pev:B, 6pev:C, 6pev:D, 6pev:E, 6pev:F, 6pev:G, 6pev:H, 6pev:I, 6pev:J, 6pev:K, 6pev:L
7 5l6i:A 1007 58 0.0598 0.0149 0.2586 3.5 3cmm:A, 3cmm:C, 5l6h:A, 5l6h:C, 5l6i:C, 5l6j:A, 5l6j:C, 4nnj:A, 4nnj:C, 6nya:A, 6nya:D, 6zhu:A, 6zhu:E, 6zhu:C, 6zhu:G, 7zh9:A
8 8oz7:A 597 67 0.0637 0.0268 0.2388 4.0 8oz7:B, 8oz7:C, 8oz7:D
9 7un1:KH 403 50 0.0637 0.0397 0.3200 5.4 8otz:DN, 7rro:DN
10 7aqs:E 159 50 0.0518 0.0818 0.2600 5.5 3ak9:A, 3ak9:C, 3ak9:B, 3ak9:D, 3ak9:E, 3ak9:G, 3ak9:F, 3ak9:H, 3ak9:I, 3ak9:K, 3ak9:J, 3ak9:L, 7aqs:A, 7aqs:C, 7aqs:B, 7aqs:D, 7aqs:G, 7aqs:F, 7aqs:H, 7aqs:I, 7aqs:K, 7aqs:J, 7aqs:L, 7aqs:M, 7aqs:O, 7aqs:N, 7aqs:P, 7aqs:Q, 7aqs:S, 7aqs:R, 7aqs:T, 7aqs:U, 7aqs:W, 7aqs:V, 7aqs:X, 1f30:A, 1f30:B, 1f30:E, 1f30:F, 1f30:G, 1f30:H, 1f30:I, 1f30:J
11 1nkw:D 178 72 0.0876 0.1236 0.3056 7.6 7a0r:D, 7a0s:D, 7a18:D, 3cf5:D, 3dll:D, 5dm6:D, 5dm7:D, 4io9:D, 4ioa:D, 4ioc:D, 5jvg:D, 5jvh:D, 3pio:D, 3pip:D, 4u67:D, 4v49:BD, 4v4g:BG, 4v4g:HG, 4v4g:DG, 4v4g:JG, 4v4g:FG, 4wfn:D, 2zjp:D, 2zjq:D, 2zjr:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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