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BioLiP
>protein
QDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQ
KRSRLCNNPTPQFGGKDCVGDVTENQICNKQDCP

The query sequence (length=114) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7yyk:A 114 114 1.0000 1.0000 1.0000 1.71e-79 1lsl:A
2 6rus:A 234 116 0.4474 0.2179 0.4397 3.24e-22 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
3 6rus:A 234 110 0.4123 0.2009 0.4273 1.47e-19 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
4 6rus:B 220 122 0.4035 0.2091 0.3770 8.06e-14 7b26:B, 7noz:D, 8q6r:D, 8q6r:F, 6rur:V, 6rur:Y, 6ruv:V, 6ruv:Y, 6rv6:B, 6s08:A, 6s0a:A, 6s0b:A, 6sej:B
5 6rus:B 220 52 0.2456 0.1273 0.5385 2.15e-12 7b26:B, 7noz:D, 8q6r:D, 8q6r:F, 6rur:V, 6rur:Y, 6ruv:V, 6ruv:Y, 6rv6:B, 6s08:A, 6s0a:A, 6s0b:A, 6sej:B
6 6rus:B 220 102 0.2807 0.1455 0.3137 1.72e-07 7b26:B, 7noz:D, 8q6r:D, 8q6r:F, 6rur:V, 6rur:Y, 6ruv:V, 6ruv:Y, 6rv6:B, 6s08:A, 6s0a:A, 6s0b:A, 6sej:B
7 6qig:A 581 56 0.2456 0.0482 0.5000 1.23e-12 3ghm:A, 3ghn:A, 3vn4:A
8 6qig:A 581 54 0.2193 0.0430 0.4630 2.50e-09 3ghm:A, 3ghn:A, 3vn4:A
9 7r84:A 52 54 0.2368 0.5192 0.5000 5.28e-11 7r84:C, 7r84:D
10 7r84:A 52 54 0.2193 0.4808 0.4630 2.95e-10 7r84:C, 7r84:D
11 6ool:A 244 87 0.2719 0.1270 0.3563 1.14e-09
12 6ool:A 244 50 0.2105 0.0984 0.4800 6.48e-08
13 7za1:E 251 51 0.2193 0.0996 0.4902 1.18e-09 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
14 7za1:E 251 50 0.1930 0.0876 0.4400 6.03e-07 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
15 5foe:B 435 53 0.2018 0.0529 0.4340 2.52e-09 5foe:A
16 5foe:B 435 53 0.1754 0.0460 0.3774 5.49e-09 5foe:A
17 8ckk:B 121 82 0.2368 0.2231 0.3293 2.42e-08 8ckg:A, 8ckg:B, 8ckk:A, 8ckl:A, 8ckl:B
18 8ckk:B 121 53 0.2105 0.1983 0.4528 3.82e-08 8ckg:A, 8ckg:B, 8ckk:A, 8ckl:A, 8ckl:B
19 4e0s:B 898 59 0.2281 0.0290 0.4407 2.34e-07 7nyc:B, 7nyd:B
20 4e0s:B 898 87 0.2544 0.0323 0.3333 2.08e-06 7nyc:B, 7nyd:B
21 4e0s:B 898 106 0.3158 0.0401 0.3396 2.40e-06 7nyc:B, 7nyd:B
22 4e0s:B 898 51 0.1491 0.0189 0.3333 6.1 7nyc:B, 7nyd:B
23 4a5w:B 871 59 0.2281 0.0299 0.4407 2.50e-07
24 4a5w:B 871 87 0.2544 0.0333 0.3333 2.39e-06
25 4a5w:B 871 106 0.3158 0.0413 0.3396 2.49e-06
26 4a5w:B 871 51 0.1491 0.0195 0.3333 6.6
27 3t5o:A 871 50 0.2105 0.0276 0.4800 4.70e-07
28 3t5o:A 871 87 0.2544 0.0333 0.3333 2.19e-06
29 3t5o:A 871 106 0.3158 0.0413 0.3396 2.44e-06
30 3t5o:A 871 51 0.1491 0.0195 0.3333 6.0
31 7nyc:C 809 51 0.2105 0.0297 0.4706 9.76e-07 7nyd:C
32 7nyc:C 809 50 0.2105 0.0297 0.4800 2.96e-05 7nyd:C
33 7nyc:C 809 52 0.1491 0.0210 0.3269 0.10 7nyd:C
34 7nyc:C 809 60 0.1754 0.0247 0.3333 0.65 7nyd:C
35 7r84:B 45 53 0.2018 0.5111 0.4340 1.51e-06 7r85:A, 7r86:C
36 7r84:B 45 53 0.1754 0.4444 0.3774 2.57e-05 7r85:A, 7r86:C
37 7nyc:D 487 50 0.2281 0.0534 0.5200 1.85e-05 7nyd:D
38 7nyc:D 487 53 0.2105 0.0493 0.4528 3.01e-05 7nyd:D
39 7r86:D 40 26 0.1228 0.3500 0.5385 3.40e-04
40 7r86:D 40 37 0.1579 0.4500 0.4865 0.001
41 4hqo:A 257 22 0.1316 0.0584 0.6818 8.74e-04 4hql:A, 4hql:B, 4hqn:A, 4hqn:B
42 4hqo:A 257 20 0.1053 0.0467 0.6000 0.13 4hql:A, 4hql:B, 4hqn:A, 4hqn:B
43 7nyd:E 484 35 0.1404 0.0331 0.4571 0.002 7nyc:E
44 7nyd:E 484 35 0.1228 0.0289 0.4000 0.26 7nyc:E
45 8b0f:E 513 35 0.1404 0.0312 0.4571 0.002 3ojy:A
46 8b0f:E 513 35 0.1228 0.0273 0.4000 0.26 3ojy:A
47 3ojy:B 504 39 0.1579 0.0357 0.4615 0.007 8b0f:D
48 3ojy:B 504 41 0.1754 0.0397 0.4878 0.083 8b0f:D
49 6cxo:A 465 58 0.1754 0.0430 0.3448 0.16 6cxo:B
50 7np8:B 620 65 0.1579 0.0290 0.2769 2.5 7np8:A, 7np8:C, 7np8:D
51 3oyo:A 225 35 0.0965 0.0489 0.3143 5.7 3oyo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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