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BioLiP
>protein
QDGEALFKSKPCAACHSVDTKMVGPALKEVAAKNAGVEGAADTLALHIKNGSQGVWGPIPHPPNPVTEEEAKILAEWVLS
LK

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1cch:A 82 82 0.9878 0.9878 0.9878 1.16e-54 1fi3:A, 2i8f:A
2 1cor:A 82 82 0.8537 0.8537 0.8537 6.03e-47 6kq1:A, 6kq1:B
3 351c:A 82 82 0.6707 0.6707 0.6707 1.00e-34 451c:A, 1dvv:A, 2exv:A, 2exv:C, 2pac:A, 3x39:A, 3x39:B
4 5xec:C 80 79 0.6220 0.6375 0.6456 2.42e-30 5xed:C
5 5xec:A 82 82 0.5732 0.5732 0.5732 1.34e-28 5xed:A
6 1a56:A 81 78 0.5488 0.5556 0.5769 1.91e-24 1a8c:A, 4jcg:A, 3zow:A, 3zow:B, 3zow:C, 3zow:D, 3zow:E, 3zow:F, 3zow:G, 3zow:H, 3zow:I, 3zow:J, 3zow:K, 3zow:L, 3zow:M, 3zow:N, 3zow:O, 3zow:P, 3zow:Q, 3zow:R, 3zox:A, 3zox:B, 3zox:C, 3zox:D, 3zoy:A, 3zoy:B, 3zoy:C, 3zoy:D
7 5aur:A 83 82 0.5244 0.5181 0.5244 5.24e-22 2ai5:A, 5aur:C, 5aur:E, 5aur:G, 5aus:A, 5aus:C, 1ayg:A, 3vym:A, 1ynr:A, 1ynr:B, 1ynr:C, 1ynr:D, 4zid:A
8 2d0s:A 79 80 0.4634 0.4810 0.4750 5.37e-19
9 3x15:A 87 89 0.3659 0.3448 0.3371 2.30e-08 3x15:G, 3x15:D, 3x15:J, 2zxy:A
10 3cp5:A 116 37 0.1951 0.1379 0.4324 8.41e-06 6cuk:A, 6cun:A
11 1fj0:A 114 67 0.3049 0.2193 0.3731 1.25e-05 1fj0:B, 1fj0:C, 1fj0:D, 1hh7:A, 1i8o:A, 1i8p:A, 1i8p:B, 1i8p:C, 1i8p:D
12 4xxl:A 92 84 0.3171 0.2826 0.3095 1.85e-05
13 1w2l:A 97 87 0.2927 0.2474 0.2759 4.45e-04
14 5z25:A 96 35 0.1707 0.1458 0.4000 0.001
15 1jdl:A 118 70 0.3415 0.2373 0.4000 0.002
16 1qn2:A 99 38 0.2317 0.1919 0.5000 0.022 1qn2:B, 1qn2:C
17 1hro:A 105 60 0.2561 0.2000 0.3500 0.036 1hro:B
18 8ed4:I 105 63 0.2805 0.2190 0.3651 0.49 8ed4:J, 8ed4:K, 8ed4:L
19 4aao:A 303 17 0.1341 0.0363 0.6471 1.9
20 4aam:A 324 17 0.1341 0.0340 0.6471 2.0 4aal:A, 4aal:B, 4aan:A, 4aao:B
21 1nml:A 316 17 0.1098 0.0285 0.5294 4.4 1rz5:A, 1rz6:A
22 3g5w:A 318 35 0.1707 0.0440 0.4000 4.7 3g5w:B, 3g5w:C, 3g5w:D, 3g5w:E, 3g5w:F
23 6t5e:A 439 31 0.1341 0.0251 0.3548 5.3
24 8a28:A 382 16 0.1098 0.0236 0.5625 9.9 8a28:B
25 6tm5:P 492 20 0.0976 0.0163 0.4000 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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