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BioLiP
>protein
QDGEALFKSKPCAACHSIDAKLVGPAFKEVAAKYAGQDGAADLLAGHIKNGSQGVWGPIPMPPNPVTEEEAKILAEWILS
QK

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1cor:A 82 82 1.0000 1.0000 1.0000 3.65e-56 6kq1:A, 6kq1:B
2 1cch:A 82 82 0.8659 0.8659 0.8659 3.71e-48 1fi3:A, 2i8f:A
3 351c:A 82 82 0.6829 0.6829 0.6829 1.39e-37 451c:A, 1dvv:A, 2exv:A, 2exv:C, 2pac:A, 3x39:A, 3x39:B
4 5xec:C 80 79 0.6463 0.6625 0.6709 2.63e-34 5xed:C
5 5xec:A 82 82 0.6220 0.6220 0.6220 7.09e-32 5xed:A
6 1a56:A 81 78 0.5610 0.5679 0.5897 2.63e-27 1a8c:A, 4jcg:A, 3zow:A, 3zow:B, 3zow:C, 3zow:D, 3zow:E, 3zow:F, 3zow:G, 3zow:H, 3zow:I, 3zow:J, 3zow:K, 3zow:L, 3zow:M, 3zow:N, 3zow:O, 3zow:P, 3zow:Q, 3zow:R, 3zox:A, 3zox:B, 3zox:C, 3zox:D, 3zoy:A, 3zoy:B, 3zoy:C, 3zoy:D
7 5aur:A 83 82 0.5854 0.5783 0.5854 2.38e-26 2ai5:A, 5aur:C, 5aur:E, 5aur:G, 5aus:A, 5aus:C, 1ayg:A, 3vym:A, 1ynr:A, 1ynr:B, 1ynr:C, 1ynr:D, 4zid:A
8 2d0s:A 79 80 0.4878 0.5063 0.5000 2.90e-21
9 3x15:A 87 86 0.3415 0.3218 0.3256 1.53e-09 3x15:G, 3x15:D, 3x15:J, 2zxy:A
10 4xxl:A 92 82 0.3171 0.2826 0.3171 1.99e-06
11 1w2l:A 97 91 0.3780 0.3196 0.3407 6.60e-06
12 3cp5:A 116 33 0.1707 0.1207 0.4242 2.30e-05 6cuk:A, 6cun:A
13 5z25:A 96 35 0.1585 0.1354 0.3714 5.59e-04
14 1fj0:A 114 34 0.1951 0.1404 0.4706 0.003 1fj0:B, 1fj0:C, 1fj0:D, 1hh7:A, 1i8o:A, 1i8p:A, 1i8p:B, 1i8p:C, 1i8p:D
15 4xyd:B 145 84 0.2561 0.1448 0.2500 0.014
16 5guw:A 142 78 0.2195 0.1268 0.2308 0.053 5guw:C, 5gux:C, 3o0r:C, 3wfb:C, 3wfc:C, 3wfd:C, 3wfe:C
17 1qn2:A 99 27 0.1463 0.1212 0.4444 0.14 1qn2:B, 1qn2:C
18 5xy3:X 101 38 0.1341 0.1089 0.2895 3.0
19 4aao:A 303 17 0.1341 0.0363 0.6471 4.2
20 1cyj:A 90 73 0.2317 0.2111 0.2603 4.5 1cyi:A
21 4aam:A 324 17 0.1341 0.0340 0.6471 4.8 4aal:A, 4aal:B, 4aan:A, 4aao:B
22 1etp:A 190 77 0.2317 0.1000 0.2468 5.2 1etp:B, 1m6z:A, 1m6z:B, 1m6z:C, 1m6z:D, 1m70:A, 1m70:B, 1m70:C, 1m70:D
23 4mc3:A 287 21 0.1098 0.0314 0.4286 5.5
24 8smr:K 181 72 0.2683 0.1215 0.3056 7.2 6q2u:A, 8smr:N, 8snh:K, 8snh:N
25 6h5l:B 220 90 0.2317 0.0864 0.2111 8.2
26 6t8y:BBB 375 30 0.1341 0.0293 0.3667 8.9 6t8y:AAA, 6t8y:CCC, 6t8y:DDD, 6t8z:AAA, 6t8z:BBB, 6t8z:CCC, 6t8z:DDD, 6t92:AAA, 6t92:BBB, 6t92:CCC, 6t92:DDD, 6t94:AAA, 6t94:BBB, 6t94:CCC, 6t94:DDD
27 6tm5:P 492 20 0.0976 0.0163 0.4000 9.5
28 4yf4:A 163 23 0.1341 0.0675 0.4783 9.8 4yf4:B, 4yf4:C, 4yf4:D, 4yf5:A, 4yf5:C, 4yf6:A, 4yf6:C, 1ylk:A, 1ylk:B, 1ylk:C, 1ylk:D
29 3g5w:A 318 35 0.1585 0.0409 0.3714 9.9 3g5w:B, 3g5w:C, 3g5w:D, 3g5w:E, 3g5w:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218