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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALNRKWAEDNEVQNCMACGKGFSVT
VRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFNDLQG

The query sequence (length=123) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1joc:A 123 123 1.0000 1.0000 1.0000 1.15e-88 1hyi:A, 1hyj:A, 1joc:B
2 2yqm:A 89 68 0.2764 0.3820 0.5000 5.03e-18 2yw8:A
3 1vfy:A 67 55 0.2195 0.4030 0.4909 2.86e-13
4 3t7l:A 74 61 0.2033 0.3378 0.4098 2.09e-12
5 6w9n:A 78 64 0.2276 0.3590 0.4375 3.91e-12
6 1dvp:A 217 93 0.2846 0.1613 0.3763 1.35e-11
7 4avx:A 218 58 0.2033 0.1147 0.4310 5.84e-11 3zyq:A
8 1x4u:A 84 63 0.1789 0.2619 0.3492 3.29e-04
9 1wfk:A 88 36 0.0976 0.1364 0.3333 0.092
10 1y02:A 91 35 0.1057 0.1429 0.3714 0.14
11 4auq:B 57 24 0.0894 0.1930 0.4583 0.40 4auq:E
12 6lpf:B 1006 53 0.1057 0.0129 0.2453 0.82 6kid:A, 6kie:A, 6kqy:A, 6kr7:A, 6lpf:A, 6lr6:A, 6lr6:B
13 3v7p:A 409 66 0.1789 0.0538 0.3333 1.5 4m51:A
14 6ys4:B 102 47 0.1301 0.1569 0.3404 3.0 6ys4:C
15 7r3b:C 371 35 0.1057 0.0350 0.3714 3.4 7r3b:A, 7r3b:B, 7r3b:D, 7r3b:E, 7r3b:F, 7r3b:G, 7r3b:H
16 8cmb:B 194 78 0.1870 0.1186 0.2949 4.0 8cmh:B, 4fqx:B, 2fse:B, 2fse:D, 1fv1:B, 1fv1:E, 4gbx:B, 1h15:B, 1h15:E, 8pje:E, 4x5w:B, 7yx9:B, 1zgl:B, 1zgl:E
17 3wem:A 830 23 0.0894 0.0133 0.4783 5.5 3w37:A, 3wel:A, 3wen:A, 3weo:A
18 7ufg:B 1182 55 0.1220 0.0127 0.2727 7.0 8d8o:B
19 8ro0:W 496 38 0.0976 0.0242 0.3158 7.8 8ro1:W

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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