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BioLiP
>protein
QCTLCKSKKHSKERCPSIWRAYILVHTIYCYNCGGKGHFGDDCKEKRSSRVPNEDGSAFTGSNL

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3nyb:B 64 64 1.0000 1.0000 1.0000 3.47e-44
2 2lli:A 124 59 0.7188 0.3710 0.7797 1.79e-25
3 9fmd:U 295 35 0.2188 0.0475 0.4000 0.061 8c6j:h, 6icz:Z, 6qdv:c, 7w5a:1, 7w5b:1, 5xjc:Z
4 6rwg:A 157 21 0.1406 0.0573 0.4286 0.18 1a1t:A, 1aaf:A, 1bj6:A, 2buo:A, 1esk:A, 2exf:A, 1f6u:A, 5i1r:A, 2jzw:A, 2l4l:A, 2m3z:A, 1mfs:A, 1q3y:A, 1q3z:A, 7r7p:I, 7r7p:L
5 6rwg:A 157 20 0.1250 0.0510 0.4000 9.3 1a1t:A, 1aaf:A, 1bj6:A, 2buo:A, 1esk:A, 2exf:A, 1f6u:A, 5i1r:A, 2jzw:A, 2l4l:A, 2m3z:A, 1mfs:A, 1q3y:A, 1q3z:A, 7r7p:I, 7r7p:L
6 6wq6:A 547 25 0.1406 0.0165 0.3600 0.73 6wqi:A, 6wqi:B, 6wqs:A, 6wqt:A
7 6bk8:O 229 19 0.1719 0.0480 0.5789 0.86
8 2ec7:A 49 21 0.1406 0.1837 0.4286 1.6
9 2ihx:A 50 20 0.1562 0.2000 0.5000 1.8
10 7b9v:c 37 18 0.1562 0.2703 0.5556 1.9
11 8opp:A 670 15 0.1250 0.0119 0.5333 2.2
12 8opt:A 783 15 0.1250 0.0102 0.5333 2.3 8ops:A, 5w0m:B, 5w0n:C, 5w0o:A, 5w0o:B
13 3gzj:A 254 21 0.1875 0.0472 0.5714 2.4 3gzj:B, 3gzj:C, 3gzj:D
14 2bl6:A 37 18 0.1250 0.2162 0.4444 3.1
15 4ecg:A 368 26 0.1719 0.0299 0.4231 3.3
16 8xof:R 265 23 0.1250 0.0302 0.3478 3.4
17 2li8:A 63 15 0.1406 0.1429 0.6000 3.4
18 6d57:B 151 54 0.2344 0.0993 0.2778 4.1 6d57:A, 4ets:A, 4ets:B
19 6exn:c 204 18 0.1562 0.0490 0.5556 4.1
20 8bja:B 1638 20 0.1562 0.0061 0.5000 4.6
21 2w57:A 131 37 0.1562 0.0763 0.2703 4.7 2w57:B
22 8bja:A 1563 20 0.1562 0.0064 0.5000 4.7
23 2a51:A 39 22 0.1250 0.2051 0.3636 4.8
24 8p82:A 1596 20 0.1562 0.0063 0.5000 4.8 8p82:B
25 8d4x:B 1669 20 0.1562 0.0060 0.5000 5.2 8c06:A, 8c06:D
26 8e0q:A 1689 20 0.1562 0.0059 0.5000 5.2 8d4x:A, 8e0q:B
27 8ewi:A 1775 20 0.1562 0.0056 0.5000 5.4 8ewi:B, 8ewi:C, 8ewi:D
28 8j6w:A 145 37 0.1719 0.0759 0.2973 5.5
29 5udz:A 139 15 0.1406 0.0647 0.6000 6.1 8ops:B, 8opt:B, 8ost:B, 3trz:A, 3trz:B, 3trz:C, 3trz:D, 3trz:E, 3trz:F, 3ts0:A, 3ts0:B, 3ts2:A, 3ts2:B, 5udz:B
30 2cqf:A 63 15 0.1406 0.1429 0.6000 6.2
31 7s7b:F 352 15 0.1094 0.0199 0.4667 7.1 7s7b:B, 7s7c:B
32 1ee9:A 317 23 0.1719 0.0347 0.4783 7.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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