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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QCRVCSSHTGLIRKYGLNICRQCFREKANDIGFNKFR

The query sequence (length=37) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7a1g:M 53 37 1.0000 0.6981 1.0000 3.61e-22 7b7d:M, 8bn3:D9, 8bqd:M, 8bqx:M, 8cah:M, 8cas:N, 8cbj:d, 8ccs:5, 8cdl:5, 8cdr:5, 8ceh:5, 8cf5:5, 8cg8:5, 8cgn:5, 8civ:5, 8cku:5, 8cmj:5, 5dat:D9, 5dat:d9, 5dc3:D9, 5dc3:d9, 5dge:D9, 5dge:d9, 5dgf:D9, 5dgf:d9, 5dgv:D9, 5dgv:d9, 8eub:Bd, 8evp:Bd, 8evq:Bd, 8evr:Bd, 8evs:Bd, 8evt:Bd, 8ewb:Bd, 8ewc:Bd, 6fai:d, 5fci:D9, 5fci:d9, 5fcj:D9, 5fcj:d9, 6gq1:AT, 6gqb:AT, 6gqv:AT, 6hhq:e, 6hhq:d9, 5i4l:D9, 5i4l:d9, 6i7o:M, 6i7o:Mb, 3j6x:29, 3j6y:29, 3j77:29, 3j78:29, 5juo:AC, 5jup:AC, 5jus:AC, 5jut:AC, 5juu:AC, 8k2d:Sd, 8k82:Sd, 5lyb:D9, 5lyb:d9, 5m1j:d2, 5mc6:M, 5mei:d9, 5mei:e, 7mpi:Bd, 7mpj:Bd, 7n8b:Bd, 5ndg:D9, 5ndg:d9, 5ndv:D9, 5ndv:d9, 5ndw:D9, 5ndw:d9, 7nrc:SM, 7nrd:SM, 5obm:D9, 5obm:d9, 5on6:d9, 5on6:e, 7osa:uS14, 7osm:uS14, 6q8y:M, 6rbd:d, 6rbe:d, 7rr5:Sd, 6s47:Be, 6snt:d, 6sv4:M, 6sv4:Mb, 6sv4:Mc, 6t4q:Sd, 6t7i:Sd, 6t7t:Sd, 6t83:db, 6t83:4, 5tbw:e, 5tbw:d9, 6tb3:M, 5tga:D9, 5tga:d9, 5tgm:D9, 5tgm:d9, 6tnu:M, 4u3m:D9, 4u3m:d9, 4u3n:D9, 4u3n:d9, 4u3u:D9, 4u3u:d9, 4u4n:D9, 4u4n:d9, 4u4o:D9, 4u4o:d9, 4u4q:D9, 4u4q:d9, 4u4r:D9, 4u4r:d9, 4u4u:D9, 4u4u:d9, 4u4y:D9, 4u4y:d9, 4u4z:D9, 4u4z:d9, 4u50:D9, 4u50:d9, 4u51:D9, 4u51:d9, 4u52:D9, 4u52:d9, 4u53:D9, 4u53:d9, 4u55:D9, 4u55:d9, 4u56:D9, 4u56:d9, 4u6f:D9, 4u6f:d9, 4uer:N, 4v6i:AN, 4v7h:AN, 4v7r:AS, 4v7r:CS, 4v88:Ad, 4v88:Cd, 4v8y:A3, 4v8z:A3, 4v92:Bd, 6wdr:d, 6woo:dd, 6xiq:AT, 6xir:AT, 8y0u:Sd, 6z6j:Sd, 6z6k:Sd, 6zce:e, 7zpq:Ad, 7zrs:Ad, 6zu9:N, 7zuw:Ad, 7zux:Dd, 6zvi:O, 7zw0:sM
2 8c3a:f 55 37 0.8378 0.5636 0.8378 1.79e-18 8c3a:DQ, 8cq7:f, 8cq7:DQ, 8cqw:f, 8cqw:DQ, 8cre:f, 8cre:DQ, 8oeq:f, 8oeq:DQ, 7pzy:e, 7q08:e, 7q0f:e, 7q0p:e, 7q0r:e, 8q5i:e
3 7r81:e2 55 37 0.8108 0.5455 0.8108 7.48e-17 7olc:Sd, 7old:Sd, 8oo0:Sd, 7z3n:Sd, 7z3o:Sd
4 6fyx:d 55 37 0.7838 0.5273 0.7838 9.32e-17 6fyy:d, 6gsm:d, 6gsn:d, 8i7j:d, 5it7:d, 5it9:d, 3j80:d, 3j81:d, 3jam:d, 3jap:d, 8rw1:d, 8s8d:d, 8s8e:d, 8s8f:d, 8s8g:d, 8s8h:d, 8s8i:d, 8s8j:d, 6uz7:d
5 4v6w:Ad 52 35 0.7568 0.5385 0.8000 8.87e-15 6xu6:Ad, 6xu7:Ad, 6xu8:Ad
6 9bh5:Ad 55 35 0.6757 0.4545 0.7143 3.75e-14 9cai:Ad
7 5xxu:d 51 37 0.6757 0.4902 0.6757 1.31e-13
8 3j7a:T 48 37 0.6757 0.5208 0.6757 1.82e-13 3jbn:T, 3jbo:T, 3jbp:T, 6okk:T, 8tpu:ST
9 5a2q:d 55 35 0.7027 0.4727 0.7429 2.56e-13 7a01:H3, 7a09:l, 5aj0:Bd, 9bdl:AS29, 9bdn:AS29, 9bdp:AS29, 8bhf:e3, 9bkd:i, 9bln:i, 8btk:AG, 7cpu:Sd, 7cpv:Sd, 4d5l:d, 4d61:d, 6d90:ee, 6d9j:ee, 9f1b:AG, 9f1c:AG, 9f1d:AG, 6fec:J, 5flx:d, 6g51:d, 6g53:d, 6g5h:d, 6g5i:d, 8g5y:Sd, 8g5z:Sd, 8g60:Sd, 8g61:Sd, 8g6j:Sd, 8glp:Sd, 6gz3:Bd, 6gz4:Bd, 6gz5:Bd, 6hcf:e1, 6hcj:e2, 6hcm:e1, 6hcq:e2, 8ifd:3E, 8ife:3E, 6ip5:3E, 6ip6:3E, 6ip8:3E, 3j7p:Sd, 3j7r:Sd, 3jag:dd, 3jah:dd, 3jai:dd, 3jaj:Sd, 3jan:Sd, 8jdj:AP, 8jdk:AP, 8jdl:AP, 8jdm:AP, 5k0y:J, 8k2c:Sd, 7k5i:d, 4kzx:d, 4kzy:d, 4kzz:d, 5lks:Sd, 7ls1:H3, 7ls2:H3, 5lzs:dd, 5lzt:dd, 5lzu:dd, 5lzv:dd, 5lzw:dd, 5lzx:dd, 5lzy:dd, 5lzz:dd, 7mdz:dd, 6mtb:dd, 6mtc:dd, 6mtd:dd, 6mte:dd, 7nwg:e2, 7nwh:dd, 7nwi:dd, 7o7y:AG, 7o7z:AG, 7o80:AG, 7o81:AG, 5oa3:d, 6ole:Sd, 6olf:Sd, 6olg:Bd, 6oli:Sd, 6olz:Bd, 6om0:Sd, 6om7:Sd, 7oya:d2, 7oyb:d2, 7oyc:d2, 7oyd:Dd, 8oz0:o, 8p03:e, 8p09:e, 8p2k:AG, 6p4g:e, 6p4h:e, 6p5i:e, 6p5j:e, 6p5k:e, 6p5n:e, 8pj1:i, 8pj2:i, 8pj3:i, 8pj4:i, 8pj5:i, 8pj6:i, 8ppk:d, 8ppl:Ad, 8q7z:AG, 8q87:AG, 7qgg:Sd, 8qoi:Sd, 7qp6:i, 7qp7:i, 7qvp:Sd, 7qvp:Rd, 6qzp:Sd, 7r4x:d, 6r5q:9, 6r6g:9, 6r6p:w, 6r7q:9, 8scb:dd, 6sgc:e1, 7syg:e, 7syh:e, 7syi:e, 7syj:e, 7syk:e, 7syl:e, 7sym:e, 7syn:e, 7syo:e, 7syp:e, 7syq:e, 7syr:e, 7sys:e, 7syt:e, 7syu:e, 7syv:e, 7syw:e, 7syx:e, 5t2c:AG, 8t4s:d, 7toq:AS29, 7tor:AS29, 7tql:f, 7ucj:Dd, 7uck:Dd, 4ug0:Sd, 4ujc:Cd, 4ujd:Cd, 4uje:Bd, 4v5z:An, 4v6x:Ad, 5vyc:d1, 5vyc:d2, 5vyc:d3, 5vyc:d4, 5vyc:d5, 5vyc:d6, 6w2s:e, 6w2t:e, 6xa1:Sd, 7xnx:Sd, 7xny:Sd, 8xsx:Sd, 8xsy:Sd, 8xsz:Sd, 8xxl:Sd, 8xxm:Sd, 8xxn:Sd, 6y0g:Sd, 8y0w:Sd, 8y0x:Sd, 6y2l:Sd, 6y57:Sd, 6yal:e, 6yam:e, 6yan:e, 6ybs:i, 8yoo:Sd, 8yop:Sd, 6z6l:Sd, 6z6m:Sd, 6z6n:Sd, 7zjw:SH, 7zjx:SH, 6zlw:f, 6zm7:Sd, 6zme:Sd, 6zmi:Sd, 6zmo:Sd, 6zmt:f, 6zmw:i, 6zn5:f, 6zoj:d, 6zol:d, 6zon:l, 6zp4:l, 6zuo:d, 6zv6:d, 6zvh:d, 6zvj:l, 6zvk:H3, 6zxd:d, 6zxe:d, 6zxf:d, 6zxg:d, 6zxh:d
10 8r57:d 55 36 0.6757 0.4545 0.6944 7.79e-12 8ip8:wa, 8ip9:wa, 8ipa:wa, 8ipb:wa, 8jiw:Bd, 4v3p:SN, 4v7e:Bd
11 8rxh:SS 56 36 0.6216 0.4107 0.6389 1.77e-11 8a3w:SS, 8a98:SS, 6az1:S, 8ove:A8, 8ovj:SS, 8rxx:SS, 5t2a:8
12 7ase:Q 57 37 0.5946 0.3860 0.5946 2.29e-11 5opt:q, 8ova:A8, 4v8m:A8
13 5xyi:d 52 35 0.5405 0.3846 0.5714 3.67e-10
14 8p5d:SDD 65 33 0.5676 0.3231 0.6364 3.69e-10 8p60:SDD, 8p60:RDD, 7qca:SDD
15 6rm3:SDD 67 36 0.5676 0.3134 0.5833 4.45e-10
16 8auv:V 55 36 0.5946 0.4000 0.6111 4.67e-10 8b2l:V1, 7qiy:N, 7qiz:XA
17 4bts:AN 54 37 0.5676 0.3889 0.5676 4.83e-10 4bts:BN, 4bts:CN, 4bts:DN, 4v5o:AN, 4v5o:BN
18 6zu5:SDD 59 35 0.5405 0.3390 0.5714 2.17e-09
19 8hkx:S14P 52 36 0.5405 0.3846 0.5556 1.18e-08 8hky:S14P, 8hkz:S14P, 8hl1:S14P, 8hl2:S14P, 8hl3:S14P, 8hl4:S14P, 8hl5:S14P, 8wkp:S14P, 8wq2:S14P, 8wq4:S14P
20 8fvy:d 85 36 0.5135 0.2235 0.5278 1.40e-08 8br8:Sh, 8brm:Sh, 8bsi:Sh, 8bsj:Sh, 8btd:Sh, 8btr:Sh, 8g4s:d, 7pwf:d, 7pwo:d1
21 6zj3:SS 52 33 0.4595 0.3269 0.5152 2.31e-06
22 6tmf:Q 56 36 0.4324 0.2857 0.4444 6.65e-06
23 5jb3:P 56 36 0.4324 0.2857 0.4444 2.62e-05 5jbh:P, 6skf:Ar, 6skg:Ar, 6sw9:P, 6swc:P, 6swe:P, 6th6:Ar, 4v4n:BP, 4v6u:AP, 7zag:P, 7zah:P, 7zai:P, 7zhg:P
24 7qep:D9 65 33 0.4865 0.2769 0.5455 4.60e-05
25 8bc3:A 217 22 0.2162 0.0369 0.3636 2.4 8bc3:H, 8bc3:B, 8bc3:C, 8bc3:D, 8bc3:E, 8bc3:F, 8bc3:G, 8bc3:I, 8bc3:J, 8bc4:A, 8bc4:B, 8bc4:C, 8bc4:D, 8bc4:E, 8bc4:F, 8bc4:G, 8bc4:H, 8bc4:J
26 7ml3:7 548 31 0.3243 0.0219 0.3871 4.6
27 7zsa:7 616 31 0.3243 0.0195 0.3871 4.6 8cen:7, 8ceo:7, 7o4i:7, 7o4j:7, 7o4k:7, 7o4l:7, 7o72:7, 7o73:7, 7o75:7, 7zs9:7, 7zsb:7
28 7k04:7 638 31 0.3243 0.0188 0.3871 4.6 5fmf:1, 7m2u:7, 7ml0:7, 7ml1:7, 7ml2:7, 5sva:Z
29 8rq9:A 316 10 0.1622 0.0190 0.6000 4.7 8rq1:A, 8rq8:A, 8rq9:C, 8rqa:A, 8rqc:A, 8rqc:D
30 6tda:L 596 30 0.2432 0.0151 0.3000 4.9
31 8buu:n 60 28 0.3514 0.2167 0.4643 5.7 8cdu:N, 8cec:Y, 8ced:N, 8cee:N, 6ha1:n, 6ha8:n, 6htq:n, 3j9w:AN, 7nhn:o, 5njt:N, 7o5b:N, 8qcq:n, 7qgu:s, 7qh4:r, 8qpp:N, 7qv1:n, 7qv2:n, 7qv3:n, 8r55:N, 8uu4:n, 8uu5:n, 8uu6:n, 8uu7:n, 8uu8:n, 8uu9:n
32 6gym:7 408 31 0.3243 0.0294 0.3871 6.0 5oqj:7, 5oqm:7
33 5fqd:E 367 10 0.1622 0.0163 0.6000 6.3 4tz4:C, 8u17:A, 6uml:C
34 6h0g:B 401 10 0.1622 0.0150 0.6000 6.6 6bn7:B, 6bn8:B, 6bn9:B, 6bnb:B, 6boy:B, 7bqu:A, 7bqv:A, 8cvp:B, 8d7u:B, 8d7v:B, 8d7w:B, 8d7x:B, 8d7y:B, 8d7z:B, 8d80:B, 8d81:B, 8dey:A, 8dey:D, 5fqd:B, 8g66:B, 6h0f:B, 6h0f:E, 6h0f:H, 6h0f:K, 6h0g:E, 5hxb:Z, 5hxb:C, 7lps:B, 7lps:E, 7lps:H, 7lps:K, 8oiz:B, 8ojh:B, 8tnp:B, 8tnq:B, 8tnr:B, 4tzc:B, 4tzc:D, 8tzx:A, 8tzx:D, 8u15:A, 8u15:D, 8u16:A, 8u16:D, 8u17:D, 7u8f:A, 7u8f:D, 8uh6:B, 5v3o:C, 3wx1:A, 3wx1:B, 3wx2:A, 3wx2:B, 6xk9:Z, 6xk9:C, 5yiz:A, 5yiz:D, 5yiz:G, 5yiz:t, 5yj0:A, 5yj0:D, 5yj0:G, 5yj0:t, 5yj1:A, 5yj1:D, 5yj1:G, 5yj1:t
35 6k15:H 393 30 0.2432 0.0229 0.3000 6.7 6kw4:H, 6kw5:H, 6v8o:I, 6v92:I
36 7nvn:Z 529 26 0.2703 0.0189 0.3846 8.0 8i1u:F, 8i1u:N, 8i9u:F, 8i9u:N, 7nvl:Z, 7nvl:z, 7nvm:Z, 7nvm:z, 7nvn:z, 8sfe:z, 8sfe:Z, 8sff:Z, 8sff:z, 8sg8:Z, 8sg8:z, 8sg9:Z, 8sg9:z, 8sgc:Z, 8sgc:z, 8sgl:Z, 8sgl:z, 8sgq:z, 8sgq:Z, 8sh9:Z, 8sh9:z, 8sha:Z, 8sha:z, 8shd:Z, 8shd:z, 8she:Z, 8she:z, 8shf:Z, 8shf:z, 8shg:Z, 8shg:z, 8shl:Z, 8shl:z, 8shn:Z, 8shn:z, 8sho:Z, 8sho:z, 8shp:Z, 8shp:z, 8shq:Z, 8shq:z, 8sht:Z, 8sht:z, 7trg:I, 7ttn:I, 7ttt:I, 7tub:I, 7wu7:F, 7wu7:N, 7wz3:Z, 7wz3:z, 7x0s:K, 7x0s:z, 7x0v:K, 7x0v:z, 7x3j:Z, 7x3j:z, 7x3u:Z, 7x3u:z
37 8g66:E 303 10 0.1622 0.0198 0.6000 8.9
38 8fmw:N 60 30 0.2703 0.1667 0.3333 9.2
39 4ci1:B 370 10 0.1622 0.0162 0.6000 9.9 4ci2:B, 4ci3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218