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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QCQDVVQDVPNVDVQMLELYDRMSFKDIDGGVWKQGWNIKYDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTKH
ILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWL
KQFMNVTPTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSY
DIPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTE
WDVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMD
RVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLL
TKPSIYSPDFSFSYFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVE
AQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLTISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDVK
FGDPREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTK
GKLESSVSVGLPSVVHQTIMRGGAPEIRNLVDIGSLDNTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKLPLQANYY
PIPSGMFIEDANTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQGVLDNKPVLHIYRLVLEKVNNCVRPSKLH
PAGYLTSAAHKASQSLLDPLDKFIFAENEWIGAQGQFGGDHPSAREDLDVSVMRRLTKSSAKTQRVGYVLHRTNLMQCGT
PEEHTQKLDVCHLLPNVARCERTTLTFLQNLEHLDGMVAPEVCPMETAAYVSSHSS

The query sequence (length=1016) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3bub:A 1016 1016 1.0000 1.0000 1.0000 0.0 2alw:A, 3blb:A, 3bud:A, 3bui:A, 3bup:A, 3buq:A, 3bvt:A, 3bvu:A, 3bvv:A, 3bvw:A, 3bvx:A, 3cv5:A, 3czn:A, 3czs:A, 3d4y:A, 3d4z:A, 3d50:A, 3d51:A, 3d52:A, 3ddf:A, 3ddg:A, 3dx0:A, 3dx1:A, 3dx2:A, 3dx3:A, 3dx4:A, 3ejp:A, 3ejq:A, 3ejr:A, 3ejs:A, 3ejt:A, 3eju:A, 2f18:A, 2f1a:A, 2f1b:A, 2f7o:A, 2f7p:A, 2f7q:A, 2f7r:A, 2fyv:A, 1hty:A, 1hww:A, 1hxk:A, 2ow6:A, 2ow7:A, 1ps3:A, 1qwn:A, 1qwu:A, 1qx1:A, 1r33:A, 1r34:A, 6rpc:A, 6rqz:A, 6rrh:A, 6rrj:A, 6rru:A, 6rrw:A, 6rrx:A, 6rry:A, 6rs0:A, 1tqs:A, 1tqt:A, 1tqu:A, 1tqv:A, 1tqw:A
2 6rrn:A 989 1014 0.9724 0.9990 0.9744 0.0
3 6b9o:B 937 853 0.2333 0.2529 0.2778 2.20e-83 6b9o:A, 6b9p:A, 6b9p:B
4 1o7d:A 291 299 0.0817 0.2852 0.2776 9.67e-32
5 7ufr:A 1038 189 0.0443 0.0434 0.2381 1.88e-11 7ufr:B, 7ufr:C, 7ufr:D, 7ufu:A, 7ufu:B, 7ufu:C, 7ufu:D
6 7uft:A 1032 186 0.0463 0.0455 0.2527 2.66e-11 7uft:B, 7uft:C, 7uft:D
7 7ufs:A 1040 193 0.0433 0.0423 0.2280 9.96e-11 7ufs:B, 7ufs:C, 7ufs:D
8 1o7d:C 150 57 0.0177 0.1200 0.3158 5.50e-05
9 7vqo:A 1180 197 0.0433 0.0373 0.2234 7.55e-05 7vqo:B, 7vqo:C, 7vqo:D
10 7dd9:A 1129 153 0.0325 0.0292 0.2157 1.03e-04 7dd9:C, 7dd9:E, 7dd9:G, 6lz1:A, 6lz1:B, 6lz1:C, 6lz1:D
11 5bof:A 434 74 0.0256 0.0599 0.3514 1.3 5boe:A, 5boe:B, 5bof:B
12 3lvt:A 833 117 0.0305 0.0372 0.2650 1.8
13 1w6t:B 430 77 0.0246 0.0581 0.3247 2.0 1w6t:A
14 7aor:z 1071 48 0.0148 0.0140 0.3125 5.9
15 6hiv:Cv 1059 48 0.0148 0.0142 0.3125 6.3 6hiw:Cv, 6hiy:Cv, 7pub:Cv
16 8esq:M 125 66 0.0236 0.1920 0.3636 9.5 8esr:M, 8etc:M, 8etg:M, 8eth:M, 8eti:M, 8etj:M, 8eug:M, 8eui:M, 8eup:M, 8euy:M, 8ev3:M
17 5cad:A 379 62 0.0187 0.0501 0.3065 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218