Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QATKIIDGFHLVGAIDWNSRDFHGYTLSPMGTTYNAYLVEDEKTTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLE
LDHAGALPALIEACQPEKIFTSSLGQKAMESHFHYKDWPVQVVKHGETLSLGKRTVTFYETRMLHWPDSMVSWFADEKVL
ISNDIFGQNIAASERFSDQIPVHTLERAMREYYANIVNPYAPQTLKAIETLVGAGVAPEFICPDHGVIFRGADQCTFAVQ
KYVEYAEQKPTNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHNNGILPY
VAGTLQYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTIARALKAKLA
A

The query sequence (length=401) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1e5d:A 401 401 1.0000 1.0000 1.0000 0.0 1e5d:B
2 1ycf:A 398 394 0.4115 0.4146 0.4188 2.16e-105 1ycf:B, 1ycf:C, 1ycf:D, 1ycg:A, 1ycg:B, 1ycg:C, 1ycg:D, 1ych:A, 1ych:B, 1ych:C, 1ych:D
3 7r0f:A 401 391 0.3392 0.3392 0.3478 6.34e-79 4d02:A, 6etb:A, 6etb:B, 5lld:A, 5lmc:A, 7r0f:B, 7r1h:A, 7r1h:B, 7r1j:A, 7r1j:B, 7r2o:A, 7r2o:B, 7r2p:A, 7r2p:B, 7r2r:A, 7r2r:B, 7r2s:A, 7r2s:B
4 6zk8:A 410 408 0.3666 0.3585 0.3603 1.05e-71 6frm:A, 6frm:B, 6frm:C, 6frm:D, 6frm:E, 6frm:H, 6frm:F, 6frm:G, 6frn:A, 6frn:B, 6frn:C, 6frn:D, 6zk8:O, 6zlf:A, 6zlf:F, 6zlf:G, 6zlf:H, 6zlf:I, 6zlf:J, 6zlf:K, 6zlf:L
5 2ohh:A 403 386 0.3242 0.3226 0.3368 4.61e-66 2ohh:B, 2ohh:D, 2ohh:E, 2ohi:A, 2ohi:B, 2ohi:D, 2ohi:E, 2ohi:G, 2ohi:H, 2ohi:I, 2ohi:J, 2ohj:A, 2ohj:B, 2ohj:D, 2ohj:E
6 2q9u:A 409 368 0.3142 0.3081 0.3424 1.79e-62 2q9u:B
7 4dik:A 402 373 0.2569 0.2562 0.2761 1.34e-33 4dik:B, 4dil:A, 4dil:B, 5v8s:A, 5v8s:B, 1vme:A, 1vme:B
8 5wid:A 144 147 0.1047 0.2917 0.2857 3.31e-13 5wid:B, 5wid:C
9 3hly:B 144 131 0.0748 0.2083 0.2290 5.26e-07
10 5lji:A 145 144 0.0898 0.2483 0.2500 9.69e-05 5lji:C
11 7luu:A 266 132 0.0873 0.1316 0.2652 7.65e-04
12 6qwo:B 253 218 0.1247 0.1976 0.2294 0.002 6qwo:A
13 6c2c:A 299 78 0.0648 0.0870 0.3333 0.003 6c2c:B, 5hif:A, 5hif:B
14 2fax:A 138 137 0.0823 0.2391 0.2409 0.005 2fdx:A, 1fla:A, 1fld:A, 1fln:A, 2flv:A, 2fox:A, 1fvx:A, 2fvx:A, 3nll:A, 4nll:A, 5nll:A, 4nul:A, 5nul:A, 6nul:A, 5ull:A
15 6v4x:H 499 55 0.0549 0.0441 0.4000 0.008 6m8q:A, 6m8q:B
16 2i7v:A 433 55 0.0549 0.0508 0.4000 0.008 8t1q:A, 8t1r:A
17 2i7t:A 404 55 0.0549 0.0545 0.4000 0.009
18 2cbn:A 306 88 0.0648 0.0850 0.2955 0.018
19 6auf:B 273 171 0.1022 0.1502 0.2398 0.042
20 3adr:A 259 35 0.0324 0.0502 0.3714 0.11 3adr:B
21 3a4y:A 431 117 0.0648 0.0603 0.2222 0.16 3a4y:B, 3a4y:C, 3a4y:D, 2dkf:A, 2dkf:B, 2dkf:C, 2dkf:D, 3idz:A, 3idz:B, 3idz:C, 3idz:D, 3ie0:A, 3ie0:B, 3ie0:C, 3ie0:D, 3ie1:A, 3ie1:B, 3ie1:C, 3ie1:D, 3ie2:A, 3ie2:B, 3ie2:C, 3ie2:D, 3iek:A, 3iek:B, 3iek:C, 3iek:D, 3iel:A, 3iel:B, 3iel:C, 3iel:D, 3iem:A, 3iem:B, 3iem:D, 3iem:C
22 6i1d:A 458 51 0.0424 0.0371 0.3333 0.20
23 1p9e:A 294 66 0.0524 0.0714 0.3182 0.50 1p9e:B
24 2j0w:A 447 48 0.0449 0.0403 0.3750 0.73 2j0x:A, 2j0x:B
25 2p4z:B 276 42 0.0399 0.0580 0.3810 1.1 2p4z:A
26 8d2z:A 306 231 0.1272 0.1667 0.2208 1.2 8d2z:B
27 7q6n:D 204 128 0.0798 0.1569 0.2500 1.3 3b6i:A, 3b6i:B, 3b6j:A, 3b6j:B, 3b6k:A, 3b6k:B, 3b6m:A, 3b6m:B, 4dy4:A, 4dy4:C, 5f12:A, 5f12:B, 7q6n:A, 7q6n:B, 7q6n:C, 2r96:A, 2r96:C, 2r97:A, 2r97:C, 4yqe:A, 4yqe:B, 3zho:A, 3zho:B
28 4le6:A 257 62 0.0524 0.0817 0.3387 1.4 4le6:B, 4le6:C, 4le6:D, 4le6:E
29 1m2x:A 219 136 0.0898 0.1644 0.2647 1.5 1m2x:B, 1m2x:C, 1m2x:D
30 6n9q:P 277 28 0.0324 0.0469 0.4643 1.5 6n9i:A, 6n9i:B, 6n9i:C, 6n9q:D, 6n9r:A, 6n9r:P, 6n9r:X
31 4o98:B 307 62 0.0524 0.0684 0.3387 1.5 4o98:A
32 7r3e:A 545 127 0.0773 0.0569 0.2441 2.0 8b4a:A, 8b4a:B, 8b4a:C, 8b4a:D, 3dh8:A, 8dq0:C, 8dq0:D, 8dq1:C, 8dq1:D, 5hio:A, 5hip:A, 5hiq:A, 5his:A, 7kgw:A, 7kgx:A, 2q0i:A, 2q0j:A, 2q0j:B, 7r3e:B, 7r3f:A, 7r3j:A, 7r3j:B, 7r3j:C, 7r3j:D, 7tz9:A, 7tza:A, 7u6g:A, 2vw8:A
33 7dck:A 246 199 0.1172 0.1911 0.2362 2.1 7dck:B
34 6q55:A 461 50 0.0374 0.0325 0.3000 2.3 6q5a:A
35 7sn8:K 588 22 0.0299 0.0204 0.5455 2.3 8uic:K
36 8gyg:B 305 21 0.0274 0.0361 0.5238 2.9 8gyg:A
37 9bct:M 648 86 0.0623 0.0386 0.2907 3.4 9bct:J, 9bcu:J, 9bcu:M
38 4olk:B 165 35 0.0299 0.0727 0.3429 3.7 4csh:A, 4csh:B, 4csh:C, 4csh:D, 4ct3:A, 4ct3:B, 4ct3:C, 4ct3:D, 4olk:A
39 8ibw:C 922 51 0.0449 0.0195 0.3529 3.7 8gh6:A, 8ibx:C, 8iby:C, 8ibz:C
40 6cgy:A 276 28 0.0274 0.0399 0.3929 5.6 6cgy:H, 6cgy:L, 6cgz:A, 6cgz:B, 6cgz:C, 6ch0:C, 6ch0:F, 6ch0:I
41 3zq4:A 550 127 0.0698 0.0509 0.2205 6.8 3zq4:C, 3zq4:D, 3zq4:E
42 1y44:A 269 28 0.0274 0.0409 0.3929 7.1
43 1d4c:A 570 54 0.0374 0.0263 0.2778 7.1 1d4c:C, 1d4c:B, 1d4c:D, 1d4d:A, 1d4e:A
44 8rbx:k 552 22 0.0274 0.0199 0.5000 8.3 7pks:k, 8rbz:k
45 7ycx:K 590 22 0.0274 0.0186 0.5000 8.5 7cun:K, 8r22:C, 8r23:C, 8r2d:C, 8rc4:k, 8uib:K
46 2fk6:A 307 28 0.0274 0.0358 0.3929 9.1 4gcw:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218