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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QARNYKLLRAKEIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSENRLRYPEY
RAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMLTQKFARSLGMLAVDNQA
RVCHGPTVASLAPTFGRGAMTNHWVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYA
PIRSGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYDKSSWNYQLDENGYAKRDET
LTHPRCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCEVLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLG
NMGMAGGGVNALRGHSNIQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSLMKSFY
GDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSCLSKLKYMVVIDPLVTETSTFW
QNHGESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRWLQWHWKGQDAPGEARNDGEILAGIYHHLRELYQSEGGKGVE
PLMKMSWNYKQPHEPQSDEVAKENNGYALEDLYDANGVLIAKKGQLLSSFAHLRDDGTTASSCWIYTGSWTEQGNQMANR
DNSDPSGLGNTLGWAWAWPLNRRVLYNRASADINGKPWDPKRMLIQWNGSKWTGNDIPDFGNAAPGTPTGPFIMQPEGMG
RLFAINKMAEGPFPEHYEPIETPLGTNPLHPNVVSNPVVRLYEQDALRMGKKEQFPYVGTTYRLTEHFHTWTKHALLNAI
AQPEQFVEISETLAAAKGINNGDRVTVSSKRGFIRAVAVVTRRLKPLNVNGQQVETVGIPIHWGFEGVARKGYIANTLTP
NVGDANSQTPEYKAFLVNIEKA

The query sequence (length=982) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1kqf:A 982 982 1.0000 1.0000 1.0000 0.0 1kqg:A
2 8cm5:A 974 987 0.4572 0.4610 0.4549 0.0 8bqg:A, 8bqh:A, 8bqi:A, 8bqj:A, 8bqk:A, 8bql:A, 8cm4:A, 8cm4:C, 8cm5:C, 8cm5:K, 8cm5:R, 8cm6:A, 8cm6:C, 8cm7:A, 8rc8:A, 8rc9:A, 8rca:A, 8rcb:A, 8rcc:A, 8rcg:A, 6sdr:A, 6sdv:A, 7z5o:AAA
3 1h0h:A 977 995 0.4430 0.4452 0.4372 0.0 1h0h:K
4 7qv7:S 571 619 0.1802 0.3100 0.2859 3.42e-63 7qv7:Y
5 7bkb:D 549 641 0.1833 0.3279 0.2808 8.31e-57 7bkb:d, 7bkc:D, 7bkc:d, 7bkd:D, 7bke:D
6 7vw6:A 913 659 0.1680 0.1807 0.2504 5.46e-46 7e5z:A, 8j83:A, 7xqw:A
7 7vw6:A 913 124 0.0336 0.0361 0.2661 2.5 7e5z:A, 8j83:A, 7xqw:A
8 1fdi:A 715 621 0.1568 0.2154 0.2480 5.66e-46 1aa6:A, 1fdo:A, 2iv2:X, 7z0t:A
9 6tg9:A 949 677 0.1609 0.1665 0.2334 8.61e-37 6tg9:E, 6tga:A, 6tga:E
10 6tg9:A 949 127 0.0336 0.0348 0.2598 0.038 6tg9:E, 6tga:A, 6tga:E
11 2v45:A 723 611 0.1415 0.1923 0.2275 3.17e-30 2jim:A, 2jio:A, 2jip:A, 2jiq:A, 2jir:A, 2nap:A, 2v3v:A
12 2v45:A 723 131 0.0387 0.0526 0.2901 1.58e-05 2jim:A, 2jio:A, 2jip:A, 2jiq:A, 2jir:A, 2nap:A, 2v3v:A
13 3ml1:A 799 611 0.1415 0.1740 0.2275 5.42e-26 3o5a:A
14 3ml1:A 799 66 0.0193 0.0238 0.2879 7.5 3o5a:A
15 2nya:A 791 611 0.1395 0.1732 0.2242 2.55e-25 2nya:F
16 2nya:A 791 131 0.0346 0.0430 0.2595 0.071 2nya:F
17 2vpw:A 734 411 0.1069 0.1431 0.2555 2.18e-21 2vpw:E, 2vpx:A, 2vpx:E, 2vpy:A, 2vpy:E, 2vpz:A, 2vpz:E
18 1ogy:A 789 611 0.1375 0.1711 0.2209 1.34e-20 1ogy:C, 1ogy:E, 1ogy:G, 1ogy:I, 1ogy:K, 1ogy:M, 1ogy:O
19 1ogy:A 789 130 0.0356 0.0444 0.2692 3.0 1ogy:C, 1ogy:E, 1ogy:G, 1ogy:I, 1ogy:K, 1ogy:M, 1ogy:O
20 2ivf:A 912 373 0.0896 0.0965 0.2359 3.80e-18
21 7bkb:H 438 262 0.0703 0.1575 0.2634 6.72e-15 7bkb:h, 7bkc:H, 7bkc:h
22 5t5i:J 431 199 0.0570 0.1299 0.2814 1.65e-11 5t5i:B, 5t5m:B, 5t61:B, 5t61:H, 5t61:N, 5t61:T, 5t61:Z, 5t61:f, 5t61:l, 5t61:r
23 2e7z:A 727 261 0.0611 0.0825 0.2299 2.08e-11
24 7b04:B 1120 245 0.0550 0.0482 0.2204 4.72e-09 7b04:E, 7b04:H, 7b04:K, 7b04:N, 7b04:Q, 7b04:T, 7b04:W
25 6cz7:A 814 242 0.0621 0.0749 0.2521 7.43e-09 6cz7:C, 6cz8:C, 6cz8:A, 6cz9:A, 6cz9:C, 6cza:A, 6cza:C
26 5chc:A 895 309 0.0764 0.0838 0.2427 1.17e-08 5ch7:A, 5ch7:C, 5ch7:E, 5chc:C, 5chc:E, 5e7o:A, 5e7o:C, 5e7o:E, 5e7o:G, 5e7o:I, 5e7o:K, 4ydd:A, 4ydd:C, 4ydd:E
27 7l5s:A 771 380 0.0784 0.0999 0.2026 5.07e-07 7l5i:A
28 7l5s:A 771 188 0.0509 0.0649 0.2660 0.043 7l5i:A
29 8cff:A 823 335 0.0754 0.0899 0.2209 4.79e-06 8cff:C, 8cff:E, 8cff:G, 8cgs:A, 8cgs:C, 8cgs:E, 8cgs:G, 8ch9:A, 8ch9:C, 8ch9:E, 8ch9:G, 1g8j:A, 1g8j:C, 1g8k:A, 1g8k:C, 1g8k:E, 1g8k:G
30 8cff:A 823 55 0.0193 0.0231 0.3455 4.5 8cff:C, 8cff:E, 8cff:G, 8cgs:A, 8cgs:C, 8cgs:E, 8cgs:G, 8ch9:A, 8ch9:C, 8ch9:E, 8ch9:G, 1g8j:A, 1g8j:C, 1g8k:A, 1g8k:C, 1g8k:E, 1g8k:G
31 4hea:3 756 211 0.0509 0.0661 0.2370 5.44e-04 2fug:3, 2fug:C, 2fug:L, 2fug:U, 4hea:D, 6i0d:3, 6i0d:D, 6i1p:3, 6i1p:D, 3i9v:3, 3i9v:C, 3iam:3, 3iam:C, 3ias:3, 3ias:C, 3ias:L, 3ias:U, 3m9s:3, 3m9s:C, 6q8o:3, 6q8o:D, 6q8w:3, 6q8w:D, 6q8x:3, 6q8x:D, 6y11:3, 6y11:D, 2ybb:3, 6ziy:3, 6zjl:3, 6zjn:3, 6zjy:3
32 3egw:A 1244 262 0.0550 0.0434 0.2061 0.003 3ir5:A, 3ir6:A, 3ir7:A, 1q16:A, 1r27:A, 1r27:C, 1siw:A, 1y4z:A, 1y5i:A, 1y5l:A, 1y5n:A
33 8oh5:C 1172 193 0.0509 0.0427 0.2591 0.004 8oh5:F, 8oh5:I, 8oh5:L, 8oh9:C, 8oh9:F, 8oh9:I, 8oh9:L
34 4aay:A 843 479 0.1018 0.1186 0.2088 0.004 4aay:C, 4aay:E, 4aay:G, 8ccq:A, 8ccq:C, 8ccq:E, 8ccq:G, 8ed4:A, 8ed4:C, 8ed4:E, 8ed4:G, 5nqd:A, 5nqd:C, 5nqd:E, 5nqd:G
35 4v4c:A 875 76 0.0244 0.0274 0.3158 0.094 4v4c:C, 4v4c:E, 4v4c:G, 4v4c:I, 4v4c:K, 4v4c:M, 4v4c:O, 4v4c:Q, 4v4c:S, 4v4c:U, 4v4c:W, 4v4d:A, 4v4d:C, 4v4d:E, 4v4d:G, 4v4d:I, 4v4d:K, 4v4d:M, 4v4d:O, 4v4d:Q, 4v4d:S, 4v4d:U, 4v4d:W, 4v4e:A, 4v4e:C, 4v4e:E, 4v4e:G, 4v4e:I, 4v4e:K, 4v4e:M, 4v4e:O, 4v4e:Q, 4v4e:S, 4v4e:U, 4v4e:W
36 1dmr:A 779 446 0.0988 0.1245 0.2175 0.31 1dms:A, 2dmr:A, 3dmr:A, 4dmr:A, 1e18:A, 1e5v:A, 1e5v:C, 1e60:A, 1e60:C, 1e61:A, 1e61:C, 1h5n:A, 1h5n:C
37 4pdb:A 129 126 0.0336 0.2558 0.2619 2.5
38 1rzr:G 332 107 0.0295 0.0873 0.2710 3.1 2jcg:A, 2nzu:G, 2nzv:G, 1rzr:C, 1rzr:A, 1rzr:D, 1sxg:B, 1zvv:A, 1zvv:B, 1zvv:G
39 8x6f:C 1153 143 0.0387 0.0330 0.2657 3.8
40 8opt:A 783 48 0.0193 0.0243 0.3958 3.9 8ops:A, 5w0m:B, 5w0n:C, 5w0o:A, 5w0o:B
41 8opp:A 670 48 0.0193 0.0284 0.3958 4.0
42 4oak:A 190 38 0.0163 0.0842 0.4211 5.3 4mur:A, 4mur:B, 4mus:A, 4mus:B, 4mut:A, 4mut:B, 4oak:B
43 7awt:G 907 94 0.0255 0.0276 0.2660 7.6 7nyr:G, 7nyu:G, 7nyv:G, 7nz1:G, 7p61:G, 7p62:G, 7p63:G, 7p64:G, 7p69:G, 7p7c:G, 7p7e:G, 7p7j:G, 7p7k:G, 7p7l:G, 7p7m:G, 7z7r:G, 7z7s:G, 7z7t:G, 7z7v:G, 7z80:G, 7z83:G, 7z84:G, 7zc5:G, 7zci:G
44 1eu1:A 767 55 0.0153 0.0196 0.2727 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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