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BioLiP
>protein
QAMVVKPLFPWDETLKFDHFSIILAPGALSESTPHEAGVIEHVVVISGELEMKIDGEWRTLYPDQGVRFAGDKPHAYRNS
SSRPVHFHSLIHYPR

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6b8w:B 95 95 1.0000 1.0000 1.0000 1.08e-67
2 1y9q:A 178 93 0.3158 0.1685 0.3226 4.43e-12
3 2h0v:A 335 68 0.2211 0.0627 0.3088 0.002 2h0v:B, 8hfb:A, 8hfb:B, 1y3t:A, 1y3t:B
4 4hwv:A 498 63 0.1789 0.0341 0.2698 0.64 4hwv:B
5 7b04:A 409 44 0.1368 0.0318 0.2955 1.1 7b04:D, 7b04:G, 7b04:J, 7b04:M, 7b04:P, 7b04:S, 7b04:V
6 5tg0:A 137 65 0.1895 0.1314 0.2769 1.4 6a53:A, 6a53:B, 6a54:A, 6a54:B, 6a55:A, 6a55:B, 8hlf:A, 8hlf:B, 5tfz:A, 5tfz:B
7 3ml4:C 208 59 0.1263 0.0577 0.2034 1.7 3ml4:A, 3ml4:B, 3ml4:D
8 4xai:A 565 50 0.1579 0.0265 0.3000 1.9 4xai:B
9 8ayr:A 677 56 0.1789 0.0251 0.3036 2.9 8ayr:B
10 5qhi:A 169 41 0.1474 0.0828 0.3415 6.8 5qhi:B, 5qhj:A, 5qhj:B, 5qhk:A, 5qhk:B, 5qhl:A, 5qhl:B, 5qhm:A, 5qho:A, 5qhp:A, 5qhq:A, 5qhr:A, 5qhs:A
11 3av4:A 1140 37 0.1158 0.0096 0.2973 6.9 3av5:A, 3av6:A, 4da4:B, 5gut:A, 5guv:A, 3pt9:A, 6w8v:B, 6w8w:A, 6w8w:B, 5wy1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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