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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRF
DSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQ
FWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT
VYGTCMPMLNLTRRKGQDIERYYPAEDDRPINLRCELLIPIRRKLAAA

The query sequence (length=288) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1d5y:A 288 288 1.0000 1.0000 1.0000 0.0 1d5y:B, 1d5y:D, 1d5y:C, 7vwy:G, 7vwz:G, 7vwz:I
2 7w5w:J 107 99 0.1979 0.5327 0.5758 1.66e-35 7w5x:K, 7w5y:K
3 1xs9:A 129 101 0.1771 0.3953 0.5050 1.68e-30 1bl0:A
4 7bef:G 106 103 0.1736 0.4717 0.4854 1.34e-28 7beg:G
5 4fe7:A 380 92 0.1007 0.0763 0.3152 1.25e-06
6 3w6v:A 111 92 0.0694 0.1802 0.2174 0.022
7 1wpk:A 146 47 0.0625 0.1233 0.3830 0.13 1adn:A, 1eyf:A, 1u8b:A, 1zgw:A
8 5xbt:A 271 131 0.1146 0.1218 0.2519 2.7 5xbi:A, 5xbi:B, 5xbt:B, 5xql:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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