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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINEMNQLSEHILVERGGGGAVLTRYGQRLI
QLYDLLAQIQQKAFDVLSDDDALPLNSLLAAISRFSLQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQS
GARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLQQGQN
VTAYFNADSVIIATL

The query sequence (length=255) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1o7l:B 256 255 0.9882 0.9844 0.9882 0.0 1h9r:A, 1h9r:B, 1h9s:A, 1h9s:B, 1o7l:A, 1o7l:C, 1o7l:D
2 1h9m:A 141 140 0.1961 0.3546 0.3571 3.41e-16 1h9m:B
3 2jda:B 142 51 0.0588 0.1056 0.2941 0.44 2jd9:A, 2jda:A
4 7usl:C 715 30 0.0431 0.0154 0.3667 1.3
5 5crw:A 242 94 0.0941 0.0992 0.2553 1.7
6 1dhr:A 236 75 0.0745 0.0805 0.2533 2.5 1dir:A, 1dir:B, 1dir:C, 1dir:D, 1hdr:A
7 8xrt:F 751 42 0.0549 0.0186 0.3333 4.4 8xrt:E, 8xrt:A, 8xrt:B, 8xrt:C, 8xrt:D, 8xru:A, 8xru:B, 8xrv:A, 8xrv:B, 8xrv:C, 8xrv:F, 8xrv:D, 8xrv:E, 8xrx:A, 8xrx:D, 8xrx:F, 8xrx:B, 8xrx:C
8 3mte:A 219 35 0.0510 0.0594 0.3714 6.2 3mte:B, 4ox9:Y, 3p2e:A, 3p2e:B, 3p2k:A, 3p2k:B, 3p2k:C, 3p2k:D, 3pb3:A, 3pb3:B
9 7m6b:A 244 43 0.0549 0.0574 0.3256 7.5 7m6b:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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