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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PYYAFAEPFFIHAITHLHVGSGSSVEEEIALPFQRDELGYPTIYASSLKGAIKSFLLKEFPDKRDVIYKVLGEDENPEEA
SLGTFLDAILFAIPSRIIEIDSAKPYVWVYVTTYELLKKVKLYLDSISQLSNASFSNLKNKIDTILAKEGKNITLDSDLK
SAILNEDFYVELEALNNKIPSIINAGVPLLVLEDSIGREVINRSLIRVRRIRIDRDKKVVETGGLWSEEYVPMKTIFFSV
LLGKESKESAIFASCILRNLRYVILGGKETIGKGIVELRWVKDVI

The query sequence (length=285) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6s6b:D 285 285 0.9965 0.9965 0.9965 0.0 6s6b:E, 6s6b:F, 6s6b:G, 6s8b:D, 6s8b:E, 6s8b:F, 6s8b:G, 6s8e:D, 6s8e:E, 6s8e:F, 6s8e:G, 6s91:D, 6s91:E, 6s91:F, 6s91:G, 6sh8:D, 6sh8:E, 6sh8:F, 6sh8:G, 6shb:D, 6shb:E, 6shb:F, 6shb:G, 6sic:D, 6sic:E, 6sic:F, 6sic:G
2 3x1l:D 331 335 0.3158 0.2719 0.2687 7.53e-15 3x1l:C, 3x1l:E
3 8h17:A 157 92 0.0912 0.1656 0.2826 0.006
4 6ifr:H 353 119 0.1193 0.0963 0.2857 0.036 6ifk:H, 6ifl:H, 6ifn:H, 6ifu:H, 6ify:H, 6ifz:H, 6ig0:H
5 6mur:D 287 49 0.0737 0.0732 0.4286 0.11 6iqw:C, 6iqw:D, 6mur:C, 6mus:C, 6mus:D, 6mus:K, 6mut:C, 6mut:D, 6muu:C, 6muu:D, 6o7e:C, 6o7e:D, 6o7h:C, 6o7h:D, 6o7i:C, 6o7i:D, 6o7i:K
6 8do6:E 205 53 0.0737 0.1024 0.3962 0.11 8do6:G, 8do6:F, 7uzw:A, 7uzw:B, 7uzw:C, 7uzw:D, 7uzx:A, 7uzx:B, 7uzx:C, 7uzx:D, 7uzy:D, 7uzy:C, 7uzy:A, 7uzy:B, 7uzz:D, 7uzz:C, 7uzz:A, 7uzz:B, 7v00:A, 7v00:B, 7v00:C, 7v00:D, 7v01:A, 7v01:B, 7v01:C, 7v02:A, 7v02:B, 7v02:C
7 7uzw:E 184 51 0.0667 0.1033 0.3725 0.26 7uzx:E
8 8x5d:K 235 65 0.0667 0.0809 0.2923 1.0 8wfx:I, 8wfx:J, 8wfx:K, 8wfx:L, 8wfx:G, 8wfx:H, 8x5d:L, 8x5d:J, 8x5d:I, 8x5d:H
9 6dzi:8 228 126 0.1123 0.1404 0.2540 1.9 6dzk:V, 8fr8:u, 5o5j:V, 5o61:BV, 8v9k:b, 8v9l:b, 8whx:c, 8wi7:c, 8wi9:c, 8wif:c, 5zeb:b, 5zep:b, 5zeu:b
10 3x1l:B 319 79 0.0702 0.0627 0.2532 3.4
11 6kf4:A 901 43 0.0526 0.0166 0.3488 3.5 9bct:A, 9bcu:A, 6kf9:A
12 1hp7:A 376 77 0.0877 0.0665 0.3247 3.5 7ael:AAA, 7api:A, 8api:A, 9api:A, 6i4v:A, 1iz2:A, 7npl:A, 8pi2:A, 4pyw:A
13 5hw4:A 228 33 0.0491 0.0614 0.4242 5.2 5hw4:B, 5hw4:C
14 6yxy:EL 559 45 0.0526 0.0268 0.3333 5.5 7aoi:XN, 6yxx:EL
15 8zc9:A 1000 31 0.0456 0.0130 0.4194 6.2 8wyc:C, 8wyc:D, 8wyf:C, 8wyf:D, 8ylt:A, 8ylt:B, 8ylt:C, 8ylt:D, 8zc9:D
16 8zc9:B 971 31 0.0456 0.0134 0.4194 6.2 8wyb:A, 8wyb:B, 8wyb:C, 8wyb:D, 8wyc:A, 8wyc:B, 8wyf:A, 8wyf:B, 8zc9:E
17 6ijb:B 538 43 0.0456 0.0242 0.3023 6.9 6ihk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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