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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PYSSPPTNLRSLRDRLTQVAERQGVVFGRLQRHVAMIVVAQFAATLTDDTGAPLLLVKGGSSLELRRGIPDSRTSKAFDT
VARRDIELIHEQLADAGETGWEGFTAIFTAPEEIDVPGMPVKPRRFTAKLSYRGRAFATVPIEVSSVEAGNADQFDTLTS
DALGLVGVPAAVAVPCMTIPWQIAQKLHAVTAVLEEPKVNDRAHDLVDLQLLEGLLLDADLMPTRSACIAIFEARAQHPW
PPRVATLPHWPLIYAGALEGLDHLELARTVDAAAQAVQRFVARIDRAT

The query sequence (length=288) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6j7n:A 290 288 0.9931 0.9862 0.9931 0.0 6j7o:A, 6j7p:A, 6j7q:A, 6j7r:A, 6j7s:A, 6j7t:A, 8xhr:A, 8xhr:B, 8xhr:C
2 5a9y:A 562 28 0.0417 0.0214 0.4286 0.77 5a9x:A
3 5epo:A 261 98 0.0868 0.0958 0.2551 0.99 5epo:B, 5epo:C, 5epo:D
4 6fsk:A 484 60 0.0729 0.0434 0.3500 1.7 6fsk:B, 6fsl:A, 6fsl:B
5 4dyu:H 157 32 0.0382 0.0701 0.3438 3.4 4dyu:A, 4dyu:B, 4dyu:C, 4dyu:D, 4dyu:E, 4dyu:F, 4dyu:I, 4dyu:J, 4dyu:K, 4dyu:L
6 3fq7:A 427 88 0.0729 0.0492 0.2386 4.8 3fq7:B, 3fq8:A, 3fq8:B, 3fqa:A, 3fqa:B, 2gsa:A, 2gsa:B, 3gsb:A, 3gsb:B, 4gsa:A, 4gsa:B, 2hoz:A, 2hoz:B, 2hp1:A, 2hp2:A, 2hp2:B, 3usf:A
7 6cp3:C 508 32 0.0521 0.0295 0.4688 4.9 4b2q:A, 4b2q:B, 4b2q:C, 4b2q:a, 4b2q:b, 4b2q:c, 6b8h:K, 6b8h:B, 6b8h:C, 6b8h:n, 6b8h:W, 6b8h:X, 6cp3:A, 6cp3:B, 6cp6:A, 6cp6:B, 6cp6:C, 8f29:A, 8f29:B, 8f29:C, 8f2k:A, 8f2k:B, 8f2k:C, 8f39:A, 8f39:B, 8f39:C, 8fl8:A, 8fl8:B, 8fl8:C, 2hld:A, 2hld:B, 2hld:C, 2hld:J, 2hld:K, 2hld:L, 2hld:S, 2hld:T, 2hld:U, 7md2:A, 7md2:C, 7md3:A, 7md3:B, 7md3:C, 3oe7:A, 3oe7:B, 3oe7:C, 3oe7:J, 3oe7:K, 3oe7:L, 3oe7:S, 3oe7:T, 3oe7:U, 3oee:A, 3oee:B, 3oee:C, 3oee:J, 3oee:K, 3oee:L, 3oee:S, 3oee:T, 3oee:U, 3oeh:A, 3oeh:B, 3oeh:C, 3oeh:J, 3oeh:K, 3oeh:L, 3oeh:S, 3oeh:T, 3oeh:U, 3ofn:A, 3ofn:B, 3ofn:C, 3ofn:J, 3ofn:K, 3ofn:L, 3ofn:S, 3ofn:T, 3ofn:U, 7tjs:A, 7tjs:B, 7tjs:C, 7tjt:A, 7tjt:B, 7tjt:C, 7tju:A, 7tju:B, 7tju:C, 7tjv:A, 7tjv:B, 7tjv:C, 7tjw:A, 7tjw:B, 7tjw:C, 7tjx:A, 7tjx:B, 7tjx:C, 2wpd:A, 2wpd:B, 2wpd:C, 2xok:A, 2xok:B, 2xok:C, 3zia:A, 3zia:B, 3zia:C, 3zia:K, 3zia:L, 3zia:M, 3zry:A, 3zry:B, 3zry:C
8 4gbm:A 283 47 0.0486 0.0495 0.2979 5.7
9 8bsc:D 313 43 0.0521 0.0479 0.3488 9.7 8bq2:A, 8bq2:B, 8bq2:C, 8bq2:D, 8bq2:E, 8bq2:F, 8bq2:G, 8bq2:H, 8bq2:I, 8br2:A, 8br2:B, 8br2:C, 8br2:D, 8br2:E, 8br2:F, 8bsc:A, 8bsc:B, 8bsc:C, 8bsc:E, 8bsc:F, 8bsc:G, 7c9a:A, 7c9a:B, 7c9a:C, 7ejc:A, 7ejc:C, 7ejc:B, 7eje:A, 7eje:B, 7eje:C, 8gyk:A, 8gyk:B, 8gyk:C, 8gyk:D, 8gyk:E, 8gyk:F, 8gyk:G, 8gyk:H, 5h1b:A, 5h1b:B, 5h1b:C, 5h1c:A, 5h1c:B, 5h1c:C, 5np7:A, 5np7:B, 5np7:C, 5np7:D, 5np7:E, 5np7:F, 5np7:G, 5nwl:A, 5nwl:B, 5nwl:C, 5nwl:D, 5nwl:E, 5nwl:F, 5nwl:G, 5nwl:H, 5nwl:I, 5nwl:J, 5nwl:K, 5nwl:L, 5nwl:M, 5nwl:N, 8pbc:J, 8pbc:K, 8pbc:I, 8pbc:H, 8pbc:G, 8pbc:F, 8pbc:E, 8pbc:D, 8pbc:C, 8pbc:B, 8pbc:A, 8pbd:I, 8pbd:J, 8pbd:H, 8pbd:G, 8pbd:F, 8pbd:E, 8pbd:D, 8pbd:C, 8pbd:B, 8pbd:A, 8rcd:A, 8rcd:B, 8rcd:C, 8rcd:D, 8rcd:E, 8rcd:F, 8rcd:G, 8rcd:H, 8rcf:A, 8rcf:B, 8rcf:C, 8rcf:D, 8rcf:E, 8rcf:F, 8rcf:G, 8rcf:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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