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BioLiP
>protein
PYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTN

The query sequence (length=38) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8i0r:v 173 38 1.0000 0.2197 1.0000 1.58e-23 7abg:F, 7abh:F, 6ff4:7, 6ff7:7, 8i0p:v, 8i0t:v, 7q4o:1, 7q4p:1, 8qo9:G, 6qx9:A2, 8qxd:8, 8r0a:8, 8r0b:8, 8rm5:8, 7vpx:B
2 8ch6:I 185 38 0.9211 0.1892 0.9211 4.89e-19 7abi:F, 7onb:M, 7qtt:I, 5z56:v, 5z57:v
3 6g90:U 196 38 0.5000 0.0969 0.5000 3.81e-06 7oqb:U, 7oqe:U
4 5nrl:U 196 38 0.5000 0.0969 0.5000 3.85e-06
5 7dco:v 207 38 0.5000 0.0918 0.5000 4.55e-06 5gm6:I, 5zwm:v, 5zwo:v
6 8qzs:r 114 33 0.3158 0.1053 0.3636 0.040 7abf:N, 7abg:N, 7abi:N, 8h6k:4N, 5o9z:N, 8q7n:r, 8qpe:r
7 8idf:A 459 28 0.2895 0.0240 0.3929 0.23
8 1xed:A 111 38 0.3158 0.1081 0.3158 0.25 1xed:B
9 8ost:A 390 29 0.3158 0.0308 0.4138 0.73
10 6iw6:A 438 29 0.3158 0.0274 0.4138 0.73 6iw6:B
11 1zu1:A 127 24 0.2632 0.0787 0.4167 0.91
12 7mo3:B 38 31 0.2368 0.2368 0.2903 1.4 7mo3:D, 7mo4:B, 7mo4:D
13 2ebv:A 57 31 0.2368 0.1579 0.2903 2.3
14 8pv1:Cb 101 31 0.2895 0.1089 0.3548 3.2 8pv2:Cb, 8pv3:Cb, 8pv4:Cb, 8pv5:Cb, 8pv6:Cb, 8pv7:Cb, 8pv8:Cb, 8pvk:Cb, 8pvl:Cb

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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