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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PYFEKYAWLFMRFSGIALVFLALGHLFIMLMWQDGVYRIDFNYVAERWASPFWQIWDMALLWLAMIHGANGMRTIIGDYA
RKNVTKFWLNSLLLLATGFTLVLGSYVLVTFDANIS

The query sequence (length=116) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6lum:D 146 116 1.0000 0.7945 1.0000 8.26e-82 6lum:H, 6lum:N
2 2bs2:F 254 116 0.2931 0.1339 0.2931 0.20 2bs2:C, 2bs3:F, 2bs3:C, 2bs4:F, 2bs4:C, 1e7p:C, 1e7p:F, 1e7p:I, 1e7p:L, 1qlb:C, 1qlb:F
3 5hdt:A 1085 54 0.1293 0.0138 0.2778 2.2 5hdt:B
4 4kir:A 460 44 0.1034 0.0261 0.2727 6.6 4kir:B, 4kqn:A, 4kqn:B, 1yny:A, 1yny:B
5 3sfw:A 461 46 0.1034 0.0260 0.2609 7.5 3sfw:B
6 6fti:3 120 70 0.1897 0.1833 0.3143 8.8 8pn9:H
7 7bam:A 1904 67 0.1466 0.0089 0.2537 9.9 7bam:B, 7ban:A, 7ban:B, 7bao:A, 7plp:A, 7plp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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