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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PWSEFRLTPAEAAAAAALAARCAQRYDETDGPEFLLDAPVIAHELPRRLRTFMARARLDAWPHALVVRGNPVDDAALGST
PVHWRTARTPGSRPLSFLLMLYAGLLGDVFGWATQQDGRVVTDVLPIKGGEHTLVSSSSRQELGWHTEDAFSPYRADYVG
LLSLRNPDGVATTLAGVPLDDLDERTLDVLFQERFLIRPDDSHLQVNNSTAQQGRVEFEGIAQAADRPEPVAILTGHRAA
PHLRVDGDFSAPAEGDEEAAAALGTLRKLIDASLYELVLDQGDVAFIDNRRAVHGRRAFQPRYDGRDRWLKRINITRDLH
RSRKAWAGDSRVLGQR

The query sequence (length=336) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6alm:A 338 336 1.0000 0.9941 1.0000 0.0 6aln:A, 6alo:A, 6alp:A, 6alq:A, 6alr:A, 6dax:A, 6daz:A, 6db2:A, 9eqf:A, 6mp9:A, 2wbo:A, 2wbp:A, 2wbq:A, 6y0n:A, 6y12:A
2 6mp8:A 308 336 0.9107 0.9935 0.9107 0.0
3 7y5f:B 341 319 0.5923 0.5836 0.6238 2.38e-123 7vgn:A, 7y5f:A, 7y5i:A, 7y5i:B, 7y5p:A, 7y5p:B, 7yhe:A, 7yhe:B, 7yw9:A
4 4ne0:A 337 333 0.4435 0.4421 0.4474 1.22e-78 4m25:A, 4m26:A, 4m26:C, 4m26:D, 4m27:A, 4m27:C, 4m27:D, 4m2c:B, 4m2c:C, 4m2c:D, 4m2e:B, 4m2e:C, 4m2e:D, 4m2f:A, 4m2f:C, 4m2f:D, 4m2g:A, 4m2g:C, 4m2g:D, 4m2i:A, 4ne0:C
5 4m25:B 317 332 0.4315 0.4574 0.4367 6.69e-74 4m25:C, 4m25:D, 4m26:B, 4m27:B, 4m2f:B, 4m2g:B, 4m2i:B, 4m2i:C, 4m2i:D, 4ne0:B, 4ne0:D
6 6daw:A 342 318 0.4286 0.4211 0.4528 5.69e-72 6daw:B
7 2og6:A 323 297 0.3185 0.3313 0.3603 4.51e-35 2og7:A
8 6f2a:C 326 290 0.2738 0.2822 0.3172 4.46e-24 6f2a:A, 6f2a:B, 6f2a:D, 6f2b:A, 6f2b:B, 6f2b:C, 6f2b:D, 6f6j:A, 6f6j:B, 6f6j:C, 6f6j:D
9 1ds1:A 323 318 0.3363 0.3498 0.3553 1.17e-20 1drt:A, 1dry:A, 1gvg:A
10 6vwq:A 325 311 0.3006 0.3108 0.3248 4.00e-18 6vwr:A
11 6euo:C 354 308 0.2202 0.2090 0.2403 8.00e-15 6euo:A, 6euo:B, 6euo:D, 6eur:A, 6eur:C, 6eur:D, 6exf:A, 6exf:C, 6exf:D, 6exh:A, 6exh:B, 6exh:C, 6exh:D, 6f9p:A, 6f9p:C, 6f9p:D
12 6eur:B 328 305 0.2202 0.2256 0.2426 1.01e-13 6exf:B
13 6f9p:B 289 162 0.1399 0.1626 0.2901 6.02e-09
14 3o2g:A 386 57 0.0565 0.0492 0.3333 0.092 4bg1:A, 4bgk:A, 4bgm:A, 4bhf:A, 4bhg:A, 4bhi:A, 4c5w:A, 4c8r:A, 4c8r:B, 4c8r:C, 4c8r:D, 4c8r:E, 4c8r:F, 4cwd:A, 3ms5:A, 3n6w:A
15 6h0h:A 410 54 0.0506 0.0415 0.3148 1.9 6h0h:B
16 2e37:C 310 84 0.0923 0.1000 0.3690 8.9 2e37:A, 2e37:E, 2e37:G, 2v7p:A, 2v7p:B, 2v7p:C, 2v7p:D, 3vph:A, 3vph:D, 3vph:B, 3vph:C, 2xxb:A, 2xxb:B, 2xxj:B, 2xxj:D, 3zzn:A, 3zzn:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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