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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PWFGMDIGGTLVKLSYFEPIDITAEEEQEEVESLKSIRKYLTSNGIRDVHLELKDLTLFGRRGNLHFIRFPTQDLPTFIQ
MGRDKNFSTLQTVLCATGGGAYKFEKDFRTIGNLHLHKLDELDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPF
NLDDPYPLLVVNIGSGVSILAVHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQADKLVRDIYGGD
YERFGLPGWAVASSFGNMIYKEKRESVSKEDLARATLVTITNNIGSVARMCAVNEKINRVVFVGNFLRVNTLSMKLLAYA
LDYWSKGQLKALFLEHEGYFGAVGALLG

The query sequence (length=348) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5kpr:A 359 354 0.9914 0.9610 0.9746 0.0 6b3v:A, 2i7p:A, 2i7p:C, 2i7p:B, 2i7p:D, 5kpt:A, 5kpz:A, 5kq8:A, 3mk6:A, 3mk6:C, 3mk6:B, 3mk6:D, 6pe6:A, 3sms:A, 7ue3:A, 7ue4:A, 7ue5:A, 7ue6:A, 7ue7:A, 7ue8:A, 7ueo:A, 7uep:A, 7ueq:A, 7uer:A, 7ues:A, 7uet:A, 7ueu:A, 7uev:A, 7uex:A, 7uey:A, 6x4j:A, 6x4k:A, 6x4l:A
2 5e26:B 362 353 0.8391 0.8066 0.8272 0.0 5e26:A, 5e26:C, 5e26:D
3 5kqd:A 312 349 0.8764 0.9776 0.8739 0.0
4 3smp:B 363 353 0.8132 0.7796 0.8017 0.0 2i7n:B, 3smp:A
5 2i7n:A 325 353 0.7500 0.8031 0.7394 0.0
6 7t1i:B 314 261 0.2989 0.3312 0.3985 3.86e-43 7t1g:B
7 7t1h:A 342 276 0.3103 0.3158 0.3913 1.65e-41 7t1g:A, 7t1h:B, 7t1i:A, 6uj5:A
8 4m7x:A 273 178 0.1466 0.1868 0.2865 1.29e-06 6avp:A, 6avp:C, 6avp:B, 6avp:D, 6awg:A, 6awg:B, 6awg:C, 6awg:D, 6awh:A, 6awh:B, 6awh:C, 6awh:D, 6awi:A, 6awi:B, 6awi:C, 6awi:D, 6awj:A, 6awj:B, 6awj:C, 6awj:D, 6ebv:A, 6ebv:B, 6ebv:C, 6ebv:D, 5elz:A, 2ews:A, 2ews:B, 5jic:A, 4m7y:A, 4m7y:B, 4nb4:A, 4nb4:B, 4nb4:C, 4nb4:D, 4nb4:E, 4nb4:F, 4nb4:G, 4nb4:H
9 8uua:v 418 77 0.0661 0.0550 0.2987 0.80 8a57:D, 8uu7:v, 8uu8:v, 8uu9:v
10 3ewr:A 167 27 0.0402 0.0838 0.5185 3.5
11 2ho4:B 252 28 0.0316 0.0437 0.3929 6.4 2ho4:A
12 6xmg:A 638 65 0.0489 0.0266 0.2615 6.9 6xmf:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218