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BioLiP
>protein
PVVKINAIEVPAGAGPELEKRFAHSAHAVENSPGFLGFQLLRPVKGEERYFVVTHWESDEAFQAWANGPAIAAHAGHRAN
PVATGASLLEFEVVLDVGG

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3hx9:A 101 99 0.9899 0.9703 0.9899 3.43e-67 6ds7:A, 6ds7:B, 6ds8:A, 6ds8:B, 3hx9:B, 4nl5:A, 4nl5:B, 6ple:A, 6ple:B
2 4jou:A 155 66 0.2424 0.1548 0.3636 9.21e-10 4fvc:A, 4fvc:B, 4fvc:C, 4fvc:D, 4fvc:E, 4fvc:F, 4oz5:A
3 8avh:B 106 79 0.2222 0.2075 0.2785 1.32e-05 8avi:A, 8avi:B
4 2zdo:D 109 95 0.2222 0.2018 0.2316 0.007 2zdo:A, 2zdo:B, 2zdo:C
5 8bsi:a 815 25 0.1313 0.0160 0.5200 0.034
6 4fnh:A 110 83 0.1919 0.1727 0.2289 0.094 4fnh:B, 4fni:A, 4fni:B, 3lgm:A, 3lgm:B, 3lgn:A, 3lgn:B, 3qgp:A, 3qgp:B, 2zdp:A, 2zdp:B
7 5w25:A 583 40 0.1515 0.0257 0.3750 2.7 5w25:B
8 7rlw:A 222 75 0.1515 0.0676 0.2000 3.0 7rlv:A, 7rlv:C, 7rlv:E, 7rlw:C, 7rlx:A, 7rly:C, 7rly:E, 7rly:A, 7rlz:A, 7rlz:D
9 8a4a:B 172 38 0.1111 0.0640 0.2895 3.5 6y7g:A, 6y7g:B
10 3dz8:A 178 38 0.1111 0.0618 0.2895 6.4 8a4b:B, 8a4b:D, 8a4c:B, 8a4c:D
11 1zbd:A 177 38 0.1010 0.0565 0.2632 6.8 3rab:A
12 7opr:A 218 45 0.1212 0.0550 0.2667 7.0 3bc1:A, 3bc1:E, 6huf:A, 6huf:O, 6huf:N, 6huf:B, 6huf:E, 6huf:C, 6huf:K, 6huf:M, 6huf:D, 6huf:P, 6huf:F, 6huf:J, 6huf:G, 6huf:I, 6huf:H, 6huf:L, 7opp:A, 7opp:C, 7opq:A, 7opq:B, 7opr:B
13 3kof:A 316 54 0.1616 0.0506 0.2963 7.5 3kof:B, 4s2b:A, 4s2b:B, 4s2c:A, 4s2c:B
14 6kst:B 372 37 0.1717 0.0457 0.4595 7.6 6kxl:A, 6kxl:B, 6kxm:A, 6kxm:B, 6kxn:A, 6kxn:B
15 5ynv:B 313 32 0.1414 0.0447 0.4375 8.4 5y72:A, 5y72:B, 5y7c:A, 5y7c:B, 5y84:A, 5y84:B, 5ynt:A, 5ynt:B, 5ynu:A, 5ynu:B, 5ynv:A, 5ynw:A, 5ynw:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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