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BioLiP
>protein
PVTYSEPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDPSNSERFCLGLLSNVNRNATVEMTRRHIGRGVRLYYIGGE
VFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGA
EYRRQTVTSTPCWIELHLNGPLQWLDKVLTQMGSPSVRCSEME

The query sequence (length=203) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6m64:A 203 203 1.0000 1.0000 1.0000 2.88e-155 7co1:A, 7co1:C, 7co1:E, 6m64:C, 6m64:E, 5xod:A, 6zvq:A
2 1dd1:B 249 220 0.4631 0.3775 0.4273 4.27e-53 1dd1:A, 1dd1:C
3 5gom:A 407 57 0.0788 0.0393 0.2807 1.3 5gnr:A, 5gof:A, 5gom:B, 5yew:A, 5yew:B, 5yew:C
4 5goe:A 384 57 0.0788 0.0417 0.2807 1.4 5gns:A, 5gnt:A
5 2l8r:A 150 76 0.1034 0.1400 0.2763 4.4 4j5r:A, 4j5r:B, 4j5s:A, 4j5s:B, 4j5s:C, 4j5s:D
6 4nen:A 1063 38 0.0591 0.0113 0.3158 6.2
7 4neh:A 1084 38 0.0591 0.0111 0.3158 6.3 5es4:A, 3k6s:A, 3k71:G
8 3k6s:C 885 38 0.0591 0.0136 0.3158 7.3 5es4:C, 5es4:E, 5es4:G, 3k6s:E, 3k6s:G, 3k71:A, 3k71:C, 3k71:E, 3k72:A, 3k72:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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